Sequence Similarity Clusters for the Entities in PDB 1ICF

Entity #1 | Chains: A,C
PROTEIN (CATHEPSIN L: HEAVY CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21218
95 % 2 2 18353 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 17875
70 % 2 2 16557
50 % 2 2 14422
40 % 2 2 12837
30 % 2 2 10982
Entity #2 | Chains: B,D
PROTEIN (CATHEPSIN L: LIGHT CHAIN) protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23670
95 % 2 2 20201 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19649
70 % 2 2 18122
50 % 2 2 15777
40 % 2 2 14080
30 % 2 2 12059
Entity #3 | Chains: I,J
PROTEIN (INVARIANT CHAIN) protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28790
95 % 1 2 23864
90 % 1 2 23114
70 % 1 2 21145
50 % 1 2 18354
40 % 1 2 16345
30 % 1 2 14004

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.