Sequence Similarity Clusters for the Entities in PDB 1ICF

Entity #1 | Chains: A,C
PROTEIN (CATHEPSIN L: HEAVY CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20383
95 % 2 2 17650
90 % 2 2 17199
70 % 2 2 15937
50 % 2 2 13925
40 % 2 2 12403
30 % 2 2 10620
Entity #2 | Chains: B,D
PROTEIN (CATHEPSIN L: LIGHT CHAIN) protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22770
95 % 2 2 19446
90 % 2 2 18923
70 % 2 2 17469
50 % 2 2 15261
40 % 2 2 13634
30 % 2 2 11689
Entity #3 | Chains: I,J
PROTEIN (INVARIANT CHAIN) protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 27673
95 % 1 2 22920
90 % 1 2 22209
70 % 1 2 20340
50 % 1 2 17692
40 % 1 2 15754
30 % 1 2 13493

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.