Sequence Similarity Clusters for the Entities in PDB 1ICF

Entity #1 | Chains: A,C
PROTEIN (CATHEPSIN L: HEAVY CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21532
95 % 2 2 18610 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 18120
70 % 2 2 16775
50 % 2 2 14595
40 % 2 2 12996
30 % 2 2 11121
Entity #2 | Chains: B,D
PROTEIN (CATHEPSIN L: LIGHT CHAIN) protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24011
95 % 2 2 20478 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19910
70 % 2 2 18341
50 % 2 2 15955
40 % 2 2 14244
30 % 2 2 12197
Entity #3 | Chains: I,J
PROTEIN (INVARIANT CHAIN) protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 29190
95 % 1 2 24185
90 % 1 2 23415
70 % 1 2 21404
50 % 1 2 18572
40 % 1 2 16540
30 % 1 2 14179

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.