Sequence Similarity Clusters for the Entities in PDB 1ICF

Entity #1 | Chains: A,C
PROTEIN (CATHEPSIN L: HEAVY CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21917
95 % 2 2 18963 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 2 18463
70 % 2 2 17061
50 % 2 2 14830
40 % 2 2 13205
30 % 2 2 11305
Entity #2 | Chains: B,D
PROTEIN (CATHEPSIN L: LIGHT CHAIN) protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24442
95 % 2 2 20880 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 20297
70 % 2 2 18643
50 % 2 2 16203
40 % 2 2 14459
30 % 2 2 12382
Entity #3 | Chains: I,J
PROTEIN (INVARIANT CHAIN) protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29725
95 % 1 2 24654 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 2 23857
70 % 1 2 21721
50 % 1 2 18816
40 % 1 2 16753
30 % 1 2 14360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.