Sequence Similarity Clusters for the Entities in PDB 1ICF

Entity #1 | Chains: A,C
PROTEIN (CATHEPSIN L: HEAVY CHAIN) protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 18407
95 % 2 2 16879 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 2 2 16502
70 % 2 2 15361
50 % 2 2 13598
40 % 2 2 12164
30 % 2 2 10282
Entity #2 | Chains: B,D
PROTEIN (CATHEPSIN L: LIGHT CHAIN) protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22887
95 % 2 2 20455 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 2 2 19867
70 % 2 2 17652
50 % 2 2 15359
40 % 2 2 13652
30 % 2 2 11467
Entity #3 | Chains: I,J
PROTEIN (INVARIANT CHAIN) protein, length: 65 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 26003
95 % 1 2 22931
90 % 1 2 22203
70 % 1 2 20259
50 % 1 2 17450
40 % 1 2 15435
30 % 1 2 12921

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures