Sequence Similarity Clusters for the Entities in PDB 1IC5

Entity #1 | Chains: L
LYSOZYME BINDING IG KAPPA CHAIN protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 14 3625
95 % 16 22 2241 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 16 22 2306
70 % 87 188 71
50 % 130 302 22
40 % 367 887 5
30 % 413 1013 7
Entity #2 | Chains: H
IGG1 FAB CHAIN H protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 66722
95 % 16 22 2239 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 16 22 2304
70 % 19 39 1079
50 % 222 540 8
40 % 368 887 5
30 % 414 1013 7
Entity #3 | Chains: Y
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 531 646 3
95 % 582 699 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 593 716 5
70 % 797 933 7
50 % 802 941 7
40 % 823 975 11
30 % 823 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.