Sequence Similarity Clusters for the Entities in PDB 1IBU

Entity #1 | Chains: A,C,E
HISTIDINE DECARBOXYLASE BETA CHAIN protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 5722
95 % 6 6 3965 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.6
PDBFlex
90 % 6 6 4015
70 % 6 6 3964
50 % 6 6 3851
40 % 6 6 3698
30 % 6 6 3460
Entity #2 | Chains: B,D,F
HISTIDINE DECARBOXYLASE ALPHA CHAIN protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 3140
95 % 6 6 3883 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 6 3945
70 % 6 6 3889
50 % 6 6 3779
40 % 6 6 3634
30 % 6 6 3390

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures