Sequence Similarity Clusters for the Entities in PDB 1IBR

Entity #1 | Chains: A,C
GTP-binding nuclear protein RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 51 494
95 % 49 74 316 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 51 78 318
70 % 53 81 351
50 % 53 81 407
40 % 54 82 424
30 % 530 782 16
Entity #2 | Chains: B,D
Importin beta-1 subunit protein, length: 462 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25376
95 % 1 6 5376 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.6
PDBFlex
90 % 1 6 5397
70 % 1 6 5322
50 % 1 6 5060
40 % 1 6 4784
30 % 1 6 4365

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.