Sequence Similarity Clusters for the Entities in PDB 1IBR

Entity #1 | Chains: A,C
GTP-binding nuclear protein RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 51 509
95 % 49 74 327 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 51 78 330
70 % 53 81 366
50 % 53 81 427
40 % 54 82 446
30 % 560 817 16
Entity #2 | Chains: B,D
Importin beta-1 subunit protein, length: 462 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25997
95 % 1 6 5500 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.6
PDBFlex
90 % 1 6 5521
70 % 1 6 5435
50 % 1 6 5167
40 % 1 6 4884
30 % 1 6 4451

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures