Sequence Similarity Clusters for the Entities in PDB 1IBR

Entity #1 | Chains: A,C
GTP-binding nuclear protein RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 55 507
95 % 49 74 334 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 5.0
PDBFlex
90 % 51 78 340
70 % 53 81 371
50 % 53 81 438
40 % 54 82 463
30 % 574 837 14
Entity #2 | Chains: B,D
Importin beta-1 subunit protein, length: 462 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29649
95 % 1 6 5841 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 1 6 5857
70 % 1 6 5730
50 % 1 6 5404
40 % 1 6 5050
30 % 1 6 4499

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures