Sequence Similarity Clusters for the Entities in PDB 1IBM

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 251 25
95 % 178 252 36
90 % 178 252 41
70 % 178 252 50
50 % 198 297 49
40 % 198 298 62
30 % 198 298 86
Entity #11 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 247 29
95 % 177 247 40
90 % 178 251 42
70 % 178 251 51
50 % 201 340 31
40 % 202 342 40
30 % 221 411 39
Entity #12 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 90 194
95 % 177 247 44
90 % 177 247 49
70 % 177 247 58
50 % 198 334 38
40 % 198 334 48
30 % 216 402 45
Entity #13 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 176 245 34
95 % 177 246 47
90 % 177 246 52
70 % 177 246 63
50 % 204 340 29
40 % 204 340 39
30 % 222 406 41
Entity #14 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 247 32
95 % 177 247 43
90 % 177 247 48
70 % 177 247 57
50 % 198 334 37
40 % 218 407 27
30 % 218 408 40
Entity #15 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 200 45
95 % 177 254 35
90 % 177 254 40
70 % 198 345 23
50 % 198 346 28
40 % 198 346 38
30 % 198 346 57
Entity #16 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 248 30
95 % 177 248 41
90 % 177 248 46
70 % 177 248 55
50 % 201 339 34
40 % 201 339 46
30 % 219 407 44
Entity #17 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 246 33
95 % 177 246 48
90 % 177 246 53
70 % 177 247 60
50 % 177 247 85
40 % 177 247 107
30 % 177 247 119
Entity #18 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 250 27
95 % 181 255 33
90 % 181 255 38
70 % 181 255 48
50 % 205 347 27
40 % 205 348 37
30 % 205 348 56
Entity #19 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 242 35
95 % 177 247 45
90 % 177 247 50
70 % 177 247 59
50 % 177 247 84
40 % 177 248 105
30 % 201 337 63
Entity #2 | Chains: X
P-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 84 229
95 % 176 241 49
90 % 177 245 54
70 % 177 245 64
50 % 177 245 87
40 % 177 245 109
30 % 177 245 121
Entity #21 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 49 585
95 % 160 212 63
90 % 160 212 66
70 % 160 212 77
50 % 160 212 108
40 % 160 212 129
30 % 160 212 142
Entity #22 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 250 26
95 % 178 250 37
90 % 178 250 43
70 % 178 250 52
50 % 199 337 33
40 % 199 337 44
30 % 199 337 59
Entity #23 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 158 196 46
95 % 177 246 46
90 % 177 246 51
70 % 177 246 62
50 % 177 246 86
40 % 177 246 108
30 % 177 246 120
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 237 39
95 % 177 237 55
90 % 177 237 59
70 % 177 237 69
50 % 177 237 93
40 % 177 237 115
30 % 177 237 130
Entity #3 | Chains: Y
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 247 28
95 % 177 248 38
90 % 177 248 44
70 % 177 248 53
50 % 198 333 36
40 % 198 334 47
30 % 198 334 61
Entity #6 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 160 211 43
95 % 160 211 64
90 % 160 211 67
70 % 160 211 78
50 % 166 261 80
40 % 166 261 98
30 % 166 261 116
Entity #7 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 175 240 36
95 % 177 248 39
90 % 177 248 45
70 % 177 248 54
50 % 198 334 35
40 % 198 335 45
30 % 198 335 60
Entity #8 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 177 247 31
95 % 177 247 42
90 % 177 247 47
70 % 177 247 56
50 % 199 338 32
40 % 199 338 43
30 % 199 340 58
Entity #9 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 252 24
95 % 185 258 32
90 % 185 258 36
70 % 185 258 47
50 % 185 258 82
40 % 185 258 101
30 % 202 297 79

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.