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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
Sequence Clustering and Redundancy Reduction Results
1IBM
Sequence Clusters for the Sequence Entities in PDB 1IBM
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 223 27
95% 153 224 40
90% 153 224 44
70% 153 224 54
50% 173 267 51
40% 173 268 64
30% 173 268 83
Entity #11: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 219 31
95% 152 219 44
90% 153 223 45
70% 153 223 55
50% 176 306 35
40% 177 308 43
30% 196 373 37
Entity #12: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 49 89 181
95% 152 219 48
90% 152 219 52
70% 152 219 62
50% 173 300 43
40% 173 300 52
30% 191 364 46
Entity #13: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 217 36
95% 152 218 51
90% 152 218 55
70% 152 218 66
50% 179 306 31
40% 179 306 42
30% 197 368 40
Entity #14: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 219 34
95% 152 219 47
90% 152 219 51
70% 152 219 61
50% 173 300 42
40% 193 369 30
30% 193 370 38
Entity #15: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 182 46
95% 152 226 39
90% 152 226 43
70% 173 311 22
50% 173 312 30
40% 173 312 41
30% 173 312 57
Entity #16: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 220 32
95% 152 220 45
90% 152 220 49
70% 152 220 59
50% 176 305 39
40% 176 305 50
30% 194 369 44
Entity #17: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 218 35
95% 152 218 52
90% 152 218 56
70% 152 219 64
50% 152 219 92
40% 152 219 114
30% 152 219 128
Entity #18: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 222 29
95% 156 227 36
90% 156 227 40
70% 156 227 52
50% 180 313 29
40% 180 314 39
30% 180 314 54
Entity #19: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 214 37
95% 152 219 49
90% 152 219 53
70% 152 219 63
50% 152 219 91
40% 152 220 113
30% 176 303 70
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 80 226
95% 151 213 56
90% 152 217 58
70% 152 217 69
50% 152 217 94
40% 152 217 116
30% 152 217 130
Entity #21: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 49 532
95% 143 194 64
90% 143 194 67
70% 143 194 79
50% 143 194 113
40% 143 194 131
30% 143 194 150
Entity #22: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 222 28
95% 153 222 41
90% 153 222 46
70% 153 222 56
50% 174 303 38
40% 174 303 48
30% 174 303 67
Entity #23: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 169 49
95% 152 218 50
90% 152 218 54
70% 152 218 65
50% 152 218 93
40% 152 218 115
30% 152 218 129
Entity #24: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 209 40
95% 152 209 59
90% 152 209 62
70% 152 209 73
50% 152 209 100
40% 152 209 123
30% 152 209 135
Entity #3: Chains: Y - ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 219 30
95% 152 220 42
90% 152 220 47
70% 152 220 57
50% 173 299 41
40% 173 300 51
30% 173 300 69
Entity #6: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 193 45
95% 143 193 65
90% 143 193 68
70% 143 193 80
50% 149 237 77
40% 149 237 102
30% 149 237 121
Entity #7: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 212 38
95% 152 220 43
90% 152 220 48
70% 152 220 58
50% 173 300 40
40% 173 301 49
30% 173 301 68
Entity #8: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 219 33
95% 152 219 46
90% 152 219 50
70% 152 219 60
50% 174 304 37
40% 174 304 47
30% 174 306 63
Entity #9: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 224 25
95% 160 230 24
90% 160 230 29
70% 160 230 41
50% 160 230 83
40% 160 230 108
30% 177 269 80
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.