Sequence Similarity Clusters for the Entities in PDB 1IBM

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 273 26
95 % 187 274 36
90 % 187 274 40
70 % 187 274 50
50 % 214 332 59
40 % 214 333 72
30 % 214 333 88
Entity #11 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 269 32
95 % 186 269 42
90 % 187 273 41
70 % 187 273 51
50 % 217 385 28
40 % 218 387 38
30 % 243 483 28
Entity #12 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 91 200
95 % 186 269 47
90 % 186 269 50
70 % 186 269 59
50 % 214 379 36
40 % 214 379 45
30 % 237 473 36
Entity #13 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 267 37
95 % 186 268 50
90 % 186 268 53
70 % 186 268 64
50 % 220 385 26
40 % 220 385 37
30 % 243 476 29
Entity #14 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 269 35
95 % 186 269 46
90 % 186 269 49
70 % 186 269 58
50 % 214 379 35
40 % 239 470 19
30 % 239 471 32
Entity #15 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 129 217 47
95 % 186 276 35
90 % 186 276 39
70 % 214 390 21
50 % 214 391 25
40 % 214 391 36
30 % 214 391 55
Entity #16 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 270 33
95 % 186 270 43
90 % 186 270 47
70 % 186 270 56
50 % 217 384 31
40 % 217 384 43
30 % 240 477 35
Entity #17 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 268 36
95 % 186 268 51
90 % 186 268 54
70 % 186 269 61
50 % 186 269 87
40 % 186 269 107
30 % 186 269 117
Entity #18 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 272 28
95 % 190 277 34
90 % 190 277 38
70 % 190 277 49
50 % 221 392 23
40 % 221 393 35
30 % 221 393 53
Entity #19 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 264 38
95 % 186 269 48
90 % 186 269 51
70 % 186 269 60
50 % 186 269 86
40 % 186 270 106
30 % 217 382 62
Entity #2 | Chains: X
P-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 87 232
95 % 185 263 52
90 % 186 267 55
70 % 186 267 65
50 % 186 267 90
40 % 186 267 109
30 % 186 267 119
Entity #21 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 51 635
95 % 169 234 62
90 % 169 234 66
70 % 169 234 77
50 % 169 234 103
40 % 169 234 129
30 % 169 234 139
Entity #22 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 272 27
95 % 187 272 39
90 % 187 272 44
70 % 187 272 53
50 % 215 382 30
40 % 215 382 41
30 % 215 382 59
Entity #23 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 217 48
95 % 186 268 49
90 % 186 268 52
70 % 186 268 63
50 % 186 268 89
40 % 186 268 108
30 % 186 268 118
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 259 41
95 % 186 259 54
90 % 186 259 58
70 % 186 259 68
50 % 186 259 93
40 % 186 259 115
30 % 186 259 128
Entity #3 | Chains: Y
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 269 31
95 % 186 270 40
90 % 186 270 45
70 % 186 270 54
50 % 214 378 34
40 % 214 379 44
30 % 214 379 61
Entity #6 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 233 44
95 % 169 233 63
90 % 169 233 67
70 % 169 233 78
50 % 175 293 78
40 % 175 293 96
30 % 175 293 113
Entity #7 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 184 262 39
95 % 186 270 41
90 % 186 270 46
70 % 186 270 55
50 % 214 379 32
40 % 214 380 42
30 % 214 380 60
Entity #8 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 269 34
95 % 186 269 45
90 % 186 269 48
70 % 186 269 57
50 % 215 383 29
40 % 215 383 40
30 % 215 385 58
Entity #9 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 274 24
95 % 194 280 32
90 % 194 280 37
70 % 194 280 48
50 % 194 280 83
40 % 194 280 102
30 % 218 332 78

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.