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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
Sequence Clustering and Redundancy Reduction Results
1IBM
Sequence Clusters for the Sequence Entities in PDB 1IBM
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 203 19
95% 137 204 32
90% 137 204 34
70% 137 204 44
50% 157 247 55
40% 157 248 70
30% 157 248 94
Entity #11: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 199 22
95% 136 199 37
90% 137 203 35
70% 137 203 45
50% 159 283 36
40% 160 285 46
30% 179 339 44
Entity #12: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 90 159
95% 136 199 41
90% 136 199 43
70% 136 199 55
50% 156 277 42
40% 156 277 54
30% 174 330 50
Entity #13: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 197 29
95% 136 198 45
90% 136 198 47
70% 136 198 60
50% 162 283 35
40% 162 283 45
30% 180 334 46
Entity #14: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 199 26
95% 136 199 40
90% 136 199 42
70% 136 199 54
50% 156 277 41
40% 176 335 35
30% 176 336 45
Entity #15: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 166 36
95% 136 206 31
90% 136 206 33
70% 156 288 24
50% 156 289 34
40% 156 289 44
30% 156 289 69
Entity #16: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 200 23
95% 136 200 38
90% 136 200 40
70% 136 200 51
50% 159 282 39
40% 159 282 50
30% 177 335 49
Entity #17: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 198 27
95% 136 198 46
90% 136 198 48
70% 136 199 57
50% 136 199 90
40% 136 199 113
30% 136 199 137
Entity #18: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 202 21
95% 140 207 30
90% 140 207 32
70% 140 207 43
50% 163 290 33
40% 163 291 43
30% 163 291 67
Entity #19: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 194 30
95% 136 199 42
90% 136 199 44
70% 136 199 56
50% 136 199 89
40% 136 200 112
30% 159 280 76
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 80 222
95% 135 193 50
90% 136 197 49
70% 136 197 61
50% 136 197 93
40% 136 197 116
30% 136 197 139
Entity #21: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 49 510
95% 127 174 71
90% 127 174 75
70% 127 174 89
50% 127 174 130
40% 127 174 148
30% 127 174 164
Entity #22: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 202 20
95% 137 202 33
90% 137 202 36
70% 137 202 47
50% 157 280 38
40% 157 280 49
30% 157 280 73
Entity #23: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 149 54
95% 136 198 44
90% 136 198 46
70% 136 198 59
50% 136 198 92
40% 136 198 114
30% 136 198 138
Entity #24: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 189 32
95% 136 189 52
90% 136 189 55
70% 136 189 67
50% 136 189 112
40% 136 189 135
30% 136 189 153
Entity #3: Chains: Y - ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 199 24
95% 136 200 35
90% 136 200 38
70% 136 200 48
50% 156 276 43
40% 156 277 52
30% 156 277 75
Entity #6: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 173 48
95% 127 173 72
90% 127 173 76
70% 127 173 91
50% 132 214 77
40% 132 214 102
30% 132 214 123
Entity #7: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 192 31
95% 136 200 36
90% 136 200 39
70% 136 200 49
50% 156 277 40
40% 156 278 51
30% 156 278 74
Entity #8: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 199 25
95% 136 199 39
90% 136 199 41
70% 136 199 52
50% 157 281 37
40% 157 281 48
30% 157 283 72
Entity #9: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 204 18
95% 144 210 29
90% 144 210 31
70% 144 210 42
50% 144 210 83
40% 144 210 107
30% 161 249 87
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.