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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
Sequence Clustering and Redundancy Reduction Results
1IBM
Sequence Clusters for the Sequence Entities in PDB 1IBM
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 272 19
95% 177 273 36
90% 177 273 38
70% 177 273 49
50% 205 323 56
40% 205 324 74
30% 205 324 96
Entity #11: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 268 21
95% 176 268 40
90% 177 272 39
70% 177 272 50
50% 220 384 35
40% 221 386 47
30% 258 459 43
Entity #12: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 113 155
95% 176 268 44
90% 176 268 46
70% 176 268 56
50% 217 378 40
40% 217 378 54
30% 253 450 50
Entity #13: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 265 27
95% 176 267 47
90% 176 267 49
70% 176 267 59
50% 223 384 34
40% 223 384 46
30% 223 389 65
Entity #14: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 268 25
95% 176 268 43
90% 176 268 45
70% 176 268 55
50% 217 378 41
40% 255 454 34
30% 255 454 44
Entity #15: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 237 35
95% 176 275 35
90% 176 275 37
70% 217 390 24
50% 217 390 33
40% 217 390 45
30% 217 390 68
Entity #16: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 269 22
95% 176 269 41
90% 176 269 43
70% 176 269 53
50% 217 380 38
40% 217 380 51
30% 253 452 47
Entity #17: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 267 26
95% 176 267 48
90% 176 267 50
70% 176 267 60
50% 176 267 94
40% 176 267 119
30% 176 267 141
Entity #18: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 271 20
95% 180 276 32
90% 180 276 34
70% 180 276 47
50% 224 391 32
40% 224 391 43
30% 224 391 67
Entity #19: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 263 28
95% 176 268 45
90% 176 268 47
70% 176 268 57
50% 176 268 92
40% 176 268 117
30% 217 378 76
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 92 221
95% 175 262 49
90% 176 266 51
70% 176 266 61
50% 176 266 95
40% 176 266 120
30% 176 266 142
Entity #21: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 49 486
95% 168 232 61
90% 168 232 64
70% 168 232 78
50% 168 232 116
40% 168 232 139
30% 168 232 161
Entity #22: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 234 37
95% 168 234 59
90% 168 234 63
70% 168 234 77
50% 218 381 37
40% 218 381 49
30% 218 381 72
Entity #23: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 206 42
95% 176 267 46
90% 176 267 48
70% 176 267 58
50% 176 267 93
40% 176 267 118
30% 176 267 140
Entity #24: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 249 34
95% 176 249 53
90% 176 249 55
70% 176 249 68
50% 176 249 105
40% 176 249 132
30% 176 249 151
Entity #3: Chains: Y - ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 268 23
95% 176 269 38
90% 176 269 41
70% 176 269 51
50% 176 269 91
40% 217 378 53
30% 217 378 75
Entity #6: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 230 38
95% 167 230 63
90% 167 230 66
70% 167 230 80
50% 182 293 74
40% 182 293 99
30% 182 293 119
Entity #7: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 261 29
95% 176 269 39
90% 176 269 42
70% 176 269 52
50% 217 378 39
40% 217 379 52
30% 217 379 74
Entity #8: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 268 24
95% 176 268 42
90% 176 268 44
70% 176 268 54
50% 218 382 36
40% 218 382 48
30% 218 384 71
Entity #9: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 273 18
95% 184 279 29
90% 184 279 30
70% 184 279 44
50% 184 279 86
40% 184 279 108
30% 212 328 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.