POP-OUT | CLOSE
 
STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
Sequence Clustering and Redundancy Reduction Results
1IBM
Sequence Clusters for the Sequence Entities in PDB 1IBM
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 259 20
95% 168 260 37
90% 168 260 39
70% 168 260 51
50% 194 308 57
40% 194 309 74
30% 194 309 97
Entity #11: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 255 23
95% 167 255 41
90% 168 259 40
70% 168 259 52
50% 209 369 36
40% 210 371 49
30% 213 408 50
Entity #12: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 113 134
95% 167 255 45
90% 167 255 48
70% 167 255 60
50% 206 363 41
40% 206 363 56
30% 208 399 59
Entity #13: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 252 29
95% 167 254 48
90% 167 254 51
70% 167 254 63
50% 212 369 34
40% 212 369 48
30% 212 374 67
Entity #14: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 255 27
95% 167 255 44
90% 167 255 47
70% 167 255 59
50% 206 363 42
40% 210 403 39
30% 210 403 53
Entity #15: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 224 37
95% 167 262 36
90% 167 262 38
70% 206 375 24
50% 206 375 33
40% 206 375 47
30% 206 375 71
Entity #16: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 256 24
95% 167 256 42
90% 167 256 45
70% 167 256 57
50% 206 365 39
40% 206 365 53
30% 208 401 57
Entity #17: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 254 28
95% 167 254 49
90% 167 254 52
70% 167 254 64
50% 167 254 99
40% 167 254 124
30% 167 254 144
Entity #18: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 258 21
95% 171 263 35
90% 171 263 37
70% 171 263 48
50% 213 376 32
40% 213 376 45
30% 213 376 69
Entity #19: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 250 31
95% 167 255 46
90% 167 255 49
70% 167 255 61
50% 167 255 97
40% 167 255 122
30% 206 363 78
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 92 219
95% 166 249 51
90% 167 253 53
70% 167 253 65
50% 167 253 100
40% 167 253 126
30% 167 253 146
Entity #21: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 49 463
95% 159 221 64
90% 159 221 68
70% 159 221 81
50% 159 221 116
40% 159 221 144
30% 159 221 166
Entity #22: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 223 38
95% 159 223 63
90% 159 223 67
70% 159 223 80
50% 207 366 38
40% 207 366 52
30% 207 366 75
Entity #23: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 193 43
95% 167 254 47
90% 167 254 50
70% 167 254 62
50% 167 254 98
40% 167 254 123
30% 167 254 143
Entity #24: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 238 34
95% 167 238 55
90% 167 238 59
70% 167 238 71
50% 167 238 110
40% 167 238 133
30% 167 238 153
Entity #3: Chains: Y - ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 255 25
95% 167 256 39
90% 167 256 43
70% 167 256 55
50% 167 256 96
40% 206 363 55
30% 206 363 77
Entity #6: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 219 39
95% 158 219 66
90% 158 219 70
70% 158 219 83
50% 173 282 81
40% 173 282 101
30% 173 282 123
Entity #7: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 248 32
95% 167 256 40
90% 167 256 44
70% 167 256 56
50% 206 363 40
40% 206 364 54
30% 206 364 76
Entity #8: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 255 26
95% 167 255 43
90% 167 255 46
70% 167 255 58
50% 207 367 37
40% 207 367 51
30% 207 369 72
Entity #9: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 260 18
95% 175 266 34
90% 175 266 36
70% 175 266 47
50% 175 266 88
40% 175 266 112
30% 201 313 95
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.