Sequence Similarity Clusters for the Entities in PDB 1IBM

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 183 259 27
95 % 183 260 37
90 % 183 260 42
70 % 183 260 51
50 % 210 312 54
40 % 210 313 68
30 % 210 313 88
Entity #11 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 255 31
95 % 182 255 42
90 % 183 259 43
70 % 183 259 52
50 % 213 361 29
40 % 214 363 39
30 % 235 440 33
Entity #12 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 91 198
95 % 182 255 46
90 % 182 255 51
70 % 182 255 60
50 % 210 355 36
40 % 210 355 46
30 % 230 431 40
Entity #13 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 253 36
95 % 182 254 49
90 % 182 254 54
70 % 182 254 64
50 % 216 361 28
40 % 216 361 38
30 % 236 434 36
Entity #14 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 255 34
95 % 182 255 45
90 % 182 255 50
70 % 182 255 59
50 % 210 355 35
40 % 232 436 20
30 % 232 437 34
Entity #15 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 207 47
95 % 182 262 36
90 % 182 262 41
70 % 210 366 21
50 % 210 367 27
40 % 210 367 37
30 % 210 367 57
Entity #16 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 256 32
95 % 182 256 43
90 % 182 256 48
70 % 182 256 57
50 % 213 360 32
40 % 213 360 44
30 % 233 435 39
Entity #17 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 254 35
95 % 182 254 50
90 % 182 254 55
70 % 182 255 62
50 % 182 255 87
40 % 182 255 108
30 % 182 255 120
Entity #18 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 258 29
95 % 186 263 35
90 % 186 263 40
70 % 186 263 50
50 % 217 368 26
40 % 217 369 36
30 % 217 369 56
Entity #19 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 250 37
95 % 182 255 47
90 % 182 255 52
70 % 182 255 61
50 % 182 255 86
40 % 182 256 107
30 % 213 358 62
Entity #2 | Chains: X
P-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 87 224
95 % 181 249 52
90 % 182 253 56
70 % 182 253 65
50 % 182 253 89
40 % 182 253 111
30 % 182 253 124
Entity #21 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 51 610
95 % 165 220 64
90 % 165 220 69
70 % 165 220 79
50 % 165 220 110
40 % 165 220 132
30 % 165 220 142
Entity #22 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 183 258 28
95 % 183 258 38
90 % 183 258 44
70 % 183 258 53
50 % 211 358 31
40 % 211 358 41
30 % 211 358 59
Entity #23 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 162 203 48
95 % 182 254 48
90 % 182 254 53
70 % 182 254 63
50 % 182 254 88
40 % 182 254 109
30 % 182 254 121
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 245 39
95 % 182 245 55
90 % 182 245 60
70 % 182 245 70
50 % 182 245 94
40 % 182 245 118
30 % 182 245 131
Entity #3 | Chains: Y
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 255 30
95 % 182 256 40
90 % 182 256 46
70 % 182 256 55
50 % 210 354 34
40 % 210 355 45
30 % 210 355 61
Entity #6 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 165 219 45
95 % 165 219 65
90 % 165 219 70
70 % 165 219 80
50 % 171 275 80
40 % 171 275 100
30 % 171 275 112
Entity #7 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 248 38
95 % 182 256 41
90 % 182 256 47
70 % 182 256 56
50 % 210 355 33
40 % 210 356 43
30 % 210 356 60
Entity #8 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 255 33
95 % 182 255 44
90 % 182 255 49
70 % 182 255 58
50 % 211 359 30
40 % 211 359 40
30 % 211 361 58
Entity #9 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 184 260 25
95 % 190 266 34
90 % 190 266 37
70 % 190 266 46
50 % 190 266 84
40 % 190 266 103
30 % 214 312 79

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.