Sequence Similarity Clusters for the Entities in PDB 1IBM

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 273 28
95 % 187 274 41
90 % 187 274 45
70 % 187 274 56
50 % 214 338 71
40 % 214 341 83
30 % 214 341 96
Entity #11 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 269 34
95 % 186 269 46
90 % 187 273 46
70 % 187 273 57
50 % 217 399 29
40 % 218 403 39
30 % 245 512 30
Entity #12 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 91 212
95 % 186 269 51
90 % 186 269 54
70 % 186 269 65
50 % 214 393 37
40 % 214 393 48
30 % 239 499 35
Entity #13 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 185 267 39
95 % 186 268 54
90 % 186 268 57
70 % 186 268 69
50 % 220 401 26
40 % 220 401 37
30 % 245 501 32
Entity #14 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 269 37
95 % 186 269 50
90 % 186 269 53
70 % 186 269 64
50 % 214 393 36
40 % 241 499 19
30 % 241 499 33
Entity #15 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 129 217 50
95 % 186 276 40
90 % 186 276 44
70 % 214 406 22
50 % 214 411 25
40 % 214 411 35
30 % 214 411 55
Entity #16 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 270 35
95 % 186 270 47
90 % 186 270 51
70 % 186 270 61
50 % 217 398 33
40 % 217 398 46
30 % 242 500 36
Entity #17 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 268 38
95 % 186 268 55
90 % 186 268 58
70 % 186 270 62
50 % 186 270 90
40 % 186 270 112
30 % 186 270 124
Entity #18 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 272 30
95 % 190 277 39
90 % 190 277 43
70 % 190 277 55
50 % 221 406 27
40 % 221 409 36
30 % 221 409 56
Entity #19 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 264 40
95 % 186 269 52
90 % 186 269 55
70 % 186 269 66
50 % 186 271 89
40 % 186 271 110
30 % 217 394 64
Entity #2 | Chains: X
P-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 87 247
95 % 185 263 57
90 % 186 267 60
70 % 186 267 70
50 % 186 267 94
40 % 186 267 115
30 % 186 267 127
Entity #21 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 51 692
95 % 169 234 64
90 % 169 234 69
70 % 169 234 81
50 % 169 234 108
40 % 169 234 133
30 % 169 234 142
Entity #22 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 187 272 29
95 % 187 272 43
90 % 187 272 48
70 % 187 272 58
50 % 215 398 30
40 % 215 401 41
30 % 215 401 58
Entity #23 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 166 217 51
95 % 186 268 53
90 % 186 268 56
70 % 186 268 68
50 % 186 268 92
40 % 186 268 113
30 % 186 268 125
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 259 43
95 % 186 259 59
90 % 186 259 63
70 % 186 259 75
50 % 186 259 97
40 % 186 259 120
30 % 186 259 131
Entity #3 | Chains: Y
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 269 33
95 % 186 270 44
90 % 186 270 49
70 % 186 270 59
50 % 214 392 35
40 % 214 395 45
30 % 214 395 62
Entity #6 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 233 48
95 % 169 233 65
90 % 169 233 70
70 % 169 233 82
50 % 175 306 83
40 % 175 306 102
30 % 175 306 114
Entity #7 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 184 262 41
95 % 186 270 45
90 % 186 270 50
70 % 186 270 60
50 % 214 394 32
40 % 214 397 43
30 % 214 397 61
Entity #8 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 269 36
95 % 186 269 49
90 % 186 269 52
70 % 186 269 63
50 % 215 398 31
40 % 215 398 44
30 % 215 400 59
Entity #9 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 188 274 27
95 % 194 280 37
90 % 194 280 41
70 % 194 280 52
50 % 194 280 87
40 % 194 280 106
30 % 218 334 93

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.