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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
Sequence Clustering and Redundancy Reduction Results
1IBM
Sequence Clusters for the Sequence Entities in PDB 1IBM
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 224 26
95% 154 225 40
90% 154 225 44
70% 154 225 55
50% 174 268 51
40% 174 269 62
30% 174 269 81
Entity #11: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 220 31
95% 153 220 44
90% 154 224 45
70% 154 224 56
50% 176 306 34
40% 177 308 44
30% 196 365 40
Entity #12: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 90 167
95% 153 220 48
90% 153 220 52
70% 153 220 63
50% 173 300 43
40% 173 300 52
30% 191 356 48
Entity #13: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 218 36
95% 153 219 51
90% 153 219 55
70% 153 219 67
50% 179 306 33
40% 179 306 43
30% 197 360 42
Entity #14: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 220 34
95% 153 220 47
90% 153 220 51
70% 153 220 62
50% 173 300 42
40% 193 361 30
30% 193 362 41
Entity #15: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 183 46
95% 153 227 38
90% 153 227 42
70% 173 311 23
50% 173 312 32
40% 173 312 42
30% 173 312 57
Entity #16: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 221 32
95% 153 221 45
90% 153 221 49
70% 153 221 60
50% 176 305 38
40% 176 305 50
30% 194 361 47
Entity #17: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 219 35
95% 153 219 52
90% 153 219 56
70% 153 220 65
50% 153 220 92
40% 153 220 113
30% 153 220 126
Entity #18: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 223 29
95% 157 228 26
90% 157 228 31
70% 157 228 43
50% 180 313 29
40% 180 314 40
30% 180 314 55
Entity #19: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 215 37
95% 153 220 49
90% 153 220 53
70% 153 220 64
50% 153 220 91
40% 153 221 112
30% 176 303 70
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 80 224
95% 152 214 56
90% 153 218 58
70% 153 218 69
50% 153 218 94
40% 153 218 116
30% 153 218 128
Entity #21: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 49 525
95% 143 194 64
90% 143 194 66
70% 143 194 79
50% 143 194 111
40% 143 194 130
30% 143 194 150
Entity #22: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 223 27
95% 154 223 41
90% 154 223 46
70% 154 223 57
50% 174 303 37
40% 174 303 48
30% 174 303 67
Entity #23: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 170 49
95% 153 219 50
90% 153 219 54
70% 153 219 66
50% 153 219 93
40% 153 219 114
30% 153 219 127
Entity #24: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 210 40
95% 153 210 59
90% 153 210 62
70% 153 210 73
50% 153 210 98
40% 153 210 120
30% 153 210 133
Entity #3: Chains: Y - ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 220 30
95% 153 221 42
90% 153 221 47
70% 153 221 58
50% 173 299 41
40% 173 300 51
30% 173 300 69
Entity #6: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 193 45
95% 143 193 65
90% 143 193 67
70% 143 193 80
50% 148 236 78
40% 148 236 99
30% 148 236 119
Entity #7: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 213 38
95% 153 221 43
90% 153 221 48
70% 153 221 59
50% 173 300 39
40% 173 301 49
30% 173 301 68
Entity #8: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 220 33
95% 153 220 46
90% 153 220 50
70% 153 220 61
50% 174 304 36
40% 174 304 47
30% 174 306 65
Entity #9: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 225 24
95% 161 231 24
90% 161 231 29
70% 161 231 41
50% 161 231 83
40% 161 231 105
30% 178 270 79
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.