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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE
Sequence Clustering and Redundancy Reduction Results
1IBM
Sequence Clusters for the Sequence Entities in PDB 1IBM
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 210 16
95% 140 211 32
90% 140 211 35
70% 140 211 44
50% 160 254 51
40% 160 255 67
30% 160 255 88
Entity #11: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 206 19
95% 139 206 38
90% 140 210 36
70% 140 210 45
50% 162 290 36
40% 163 292 46
30% 182 347 44
Entity #12: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 50 90 160
95% 139 206 42
90% 139 206 44
70% 139 206 53
50% 159 284 42
40% 159 284 52
30% 177 338 49
Entity #13: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 138 204 25
95% 139 205 45
90% 139 205 47
70% 139 205 57
50% 165 290 35
40% 165 290 45
30% 183 342 46
Entity #14: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 206 23
95% 139 206 41
90% 139 206 43
70% 139 206 52
50% 159 284 41
40% 179 343 34
30% 179 344 45
Entity #15: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 172 33
95% 139 213 31
90% 139 213 34
70% 159 295 24
50% 159 296 34
40% 159 296 44
30% 159 296 67
Entity #16: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 207 20
95% 139 207 39
90% 139 207 41
70% 139 207 50
50% 162 289 39
40% 162 289 49
30% 180 343 48
Entity #17: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 205 24
95% 139 205 46
90% 139 205 48
70% 139 206 55
50% 139 206 85
40% 139 206 110
30% 139 206 129
Entity #18: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 209 18
95% 143 214 29
90% 143 214 32
70% 143 214 42
50% 166 297 33
40% 166 298 43
30% 166 298 65
Entity #19: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 201 29
95% 139 206 43
90% 139 206 45
70% 139 206 54
50% 139 206 84
40% 139 207 109
30% 162 287 74
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 45 80 223
95% 138 200 47
90% 139 204 49
70% 139 204 58
50% 139 204 87
40% 139 204 112
30% 139 204 131
Entity #21: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 49 515
95% 129 180 55
90% 129 180 57
70% 129 180 72
50% 129 180 119
40% 129 180 143
30% 129 180 159
Entity #22: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 209 17
95% 140 209 33
90% 140 209 37
70% 140 209 46
50% 160 287 38
40% 160 287 48
30% 160 287 71
Entity #23: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 156 52
95% 139 205 44
90% 139 205 46
70% 139 205 56
50% 139 205 86
40% 139 205 111
30% 139 205 130
Entity #24: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 196 32
95% 139 196 51
90% 139 196 53
70% 139 196 64
50% 139 196 97
40% 139 196 120
30% 139 196 143
Entity #3: Chains: Y - ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 206 21
95% 139 207 35
90% 139 207 38
70% 139 207 47
50% 159 283 43
40% 159 284 51
30% 159 284 73
Entity #6: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 179 36
95% 129 179 56
90% 129 179 59
70% 129 179 73
50% 134 220 77
40% 134 220 100
30% 134 220 120
Entity #7: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 199 30
95% 139 207 37
90% 139 207 40
70% 139 207 49
50% 159 284 40
40% 159 285 50
30% 159 285 72
Entity #8: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 206 22
95% 139 206 40
90% 139 206 42
70% 139 206 51
50% 160 288 37
40% 160 288 47
30% 160 290 69
Entity #9: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 211 15
95% 147 217 28
90% 147 217 31
70% 147 217 41
50% 147 217 78
40% 147 217 102
30% 164 256 85
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.