Sequence Similarity Clusters for the Entities in PDB 1IBM

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 243 14
95 % 170 244 25
90 % 170 244 29
70 % 170 244 40
50 % 190 289 50
40 % 190 290 62
30 % 190 290 83
Entity #11 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 239 19
95 % 169 239 31
90 % 170 243 30
70 % 170 243 41
50 % 193 330 31
40 % 194 332 41
30 % 213 401 37
Entity #12 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 49 90 190
95 % 169 239 35
90 % 169 239 40
70 % 169 239 49
50 % 190 324 39
40 % 190 324 49
30 % 208 392 47
Entity #13 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 168 237 25
95 % 169 238 38
90 % 169 238 43
70 % 169 238 53
50 % 196 330 30
40 % 196 330 40
30 % 214 396 41
Entity #14 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 239 23
95 % 169 239 34
90 % 169 239 39
70 % 169 239 48
50 % 190 324 38
40 % 210 397 27
30 % 210 398 39
Entity #15 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 118 194 42
95 % 169 246 22
90 % 169 246 27
70 % 190 335 23
50 % 190 336 29
40 % 190 336 39
30 % 190 336 56
Entity #16 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 240 20
95 % 169 240 32
90 % 169 240 37
70 % 169 240 46
50 % 193 329 35
40 % 193 329 46
30 % 211 397 46
Entity #17 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 238 24
95 % 169 238 39
90 % 169 238 44
70 % 169 239 51
50 % 169 239 82
40 % 169 239 107
30 % 169 239 123
Entity #18 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 242 16
95 % 173 247 21
90 % 173 247 26
70 % 173 247 37
50 % 197 337 27
40 % 197 338 38
30 % 197 338 54
Entity #19 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 234 26
95 % 169 239 36
90 % 169 239 41
70 % 169 239 50
50 % 169 239 81
40 % 169 240 106
30 % 193 327 64
Entity #2 | Chains: X
P-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 84 225
95 % 168 233 40
90 % 169 237 45
70 % 169 237 54
50 % 169 237 87
40 % 169 237 113
30 % 169 237 128
Entity #21 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 49 564
95 % 153 205 63
90 % 153 205 66
70 % 153 205 75
50 % 153 205 109
40 % 153 205 129
30 % 153 205 145
Entity #22 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 170 242 15
95 % 170 242 26
90 % 170 242 31
70 % 170 242 42
50 % 191 327 34
40 % 191 327 44
30 % 191 327 60
Entity #23 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 150 188 48
95 % 169 238 37
90 % 169 238 42
70 % 169 238 52
50 % 169 238 83
40 % 169 238 109
30 % 169 238 125
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 229 39
95 % 169 229 54
90 % 169 229 58
70 % 169 229 69
50 % 169 229 96
40 % 169 229 118
30 % 169 229 132
Entity #3 | Chains: Y
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 239 17
95 % 169 240 27
90 % 169 240 33
70 % 169 240 43
50 % 190 323 37
40 % 190 324 47
30 % 190 324 63
Entity #6 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 153 204 43
95 % 153 204 64
90 % 153 204 67
70 % 153 204 76
50 % 159 252 68
40 % 159 252 93
30 % 159 252 110
Entity #7 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 167 232 27
95 % 169 240 28
90 % 169 240 34
70 % 169 240 44
50 % 190 324 36
40 % 190 325 45
30 % 190 325 62
Entity #8 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 169 239 22
95 % 169 239 33
90 % 169 239 38
70 % 169 239 47
50 % 191 328 33
40 % 191 328 43
30 % 191 330 59
Entity #9 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 171 244 13
95 % 177 250 20
90 % 177 250 25
70 % 177 250 35
50 % 177 250 70
40 % 177 250 94
30 % 194 289 80

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.