POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBL
Sequence Clusters for the Sequence Entities in PDB 1IBL
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 193 20
95% 96 194 36
90% 96 194 38
70% 96 194 50
50% 115 235 56
40% 115 236 73
30% 115 236 96
Entity #11: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 189 22
95% 95 189 40
90% 96 193 39
70% 96 193 51
50% 117 269 35
40% 118 271 46
30% 136 321 44
Entity #12: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 87 159
95% 95 189 44
90% 95 189 47
70% 95 189 57
50% 114 263 40
40% 114 263 55
30% 131 312 51
Entity #13: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 187 28
95% 95 188 47
90% 95 188 50
70% 95 188 60
50% 120 269 34
40% 120 269 45
30% 120 274 65
Entity #14: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 189 26
95% 95 189 43
90% 95 189 46
70% 95 189 56
50% 114 263 41
40% 133 316 35
30% 133 316 45
Entity #15: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 158 35
95% 95 196 35
90% 95 196 37
70% 114 275 24
50% 114 275 33
40% 114 275 44
30% 114 275 69
Entity #16: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 190 23
95% 95 190 41
90% 95 190 44
70% 95 190 54
50% 117 268 38
40% 117 268 51
30% 134 317 48
Entity #17: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 188 27
95% 95 188 48
90% 95 188 51
70% 95 188 61
50% 95 188 94
40% 95 188 119
30% 95 188 142
Entity #18: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 192 21
95% 99 197 33
90% 99 197 35
70% 99 197 47
50% 121 276 32
40% 121 276 43
30% 121 276 66
Entity #19: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 184 29
95% 95 189 45
90% 95 189 48
70% 95 189 58
50% 95 189 92
40% 95 189 117
30% 117 266 76
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 79 222
95% 94 183 49
90% 95 187 52
70% 95 187 62
50% 95 187 95
40% 95 187 120
30% 95 187 143
Entity #21: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 49 491
95% 89 168 61
90% 89 168 64
70% 89 168 80
50% 89 168 117
40% 89 168 139
30% 89 168 161
Entity #22: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 170 37
95% 89 170 59
90% 89 170 63
70% 89 170 78
50% 115 266 37
40% 115 266 50
30% 115 266 73
Entity #23: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 140 42
95% 95 188 46
90% 95 188 49
70% 95 188 59
50% 95 188 93
40% 95 188 118
30% 95 188 141
Entity #24: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 179 34
95% 95 179 54
90% 95 179 56
70% 95 179 69
50% 95 179 105
40% 95 179 132
30% 95 179 151
Entity #3: Chains: Y - ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 189 24
95% 95 190 38
90% 95 190 42
70% 95 190 52
50% 95 190 91
40% 114 263 54
30% 114 263 75
Entity #6: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 166 38
95% 88 166 63
90% 88 166 66
70% 88 166 82
50% 93 205 77
40% 93 205 101
30% 93 205 120
Entity #7: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 182 31
95% 95 190 39
90% 95 190 43
70% 95 190 53
50% 114 263 39
40% 114 264 52
30% 114 264 74
Entity #8: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 189 25
95% 95 189 42
90% 95 189 45
70% 95 189 55
50% 115 267 36
40% 115 267 49
30% 115 269 72
Entity #9: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 194 19
95% 103 200 29
90% 103 200 30
70% 103 200 45
50% 103 200 86
40% 103 200 108
30% 119 237 93
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.