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An Information Portal to 105212 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBL
Sequence Clusters for the Sequence Entities in PDB 1IBL
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 272 19
95% 123 273 36
90% 123 273 38
70% 123 273 49
50% 151 323 56
40% 151 324 74
30% 151 324 96
Entity #11: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 268 21
95% 122 268 40
90% 123 272 39
70% 123 272 50
50% 166 384 35
40% 167 386 47
30% 202 459 43
Entity #12: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 32 113 155
95% 122 268 44
90% 122 268 46
70% 122 268 56
50% 163 378 40
40% 163 378 54
30% 197 450 50
Entity #13: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 265 27
95% 122 267 47
90% 122 267 49
70% 122 267 59
50% 169 384 34
40% 169 384 46
30% 169 389 65
Entity #14: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 268 25
95% 122 268 43
90% 122 268 45
70% 122 268 55
50% 163 378 41
40% 199 454 34
30% 199 454 44
Entity #15: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 237 35
95% 122 275 35
90% 122 275 37
70% 163 390 24
50% 163 390 33
40% 163 390 45
30% 163 390 68
Entity #16: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 269 22
95% 122 269 41
90% 122 269 43
70% 122 269 53
50% 163 380 38
40% 163 380 51
30% 197 452 47
Entity #17: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 267 26
95% 122 267 48
90% 122 267 50
70% 122 267 60
50% 122 267 94
40% 122 267 119
30% 122 267 141
Entity #18: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 271 20
95% 126 276 32
90% 126 276 34
70% 126 276 47
50% 170 391 32
40% 170 391 43
30% 170 391 67
Entity #19: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 263 28
95% 122 268 45
90% 122 268 47
70% 122 268 57
50% 122 268 92
40% 122 268 117
30% 163 378 76
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 92 221
95% 121 262 49
90% 122 266 51
70% 122 266 61
50% 122 266 95
40% 122 266 120
30% 122 266 142
Entity #21: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 49 486
95% 116 232 61
90% 116 232 64
70% 116 232 78
50% 116 232 116
40% 116 232 139
30% 116 232 161
Entity #22: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 116 234 37
95% 116 234 59
90% 116 234 63
70% 116 234 77
50% 164 381 37
40% 164 381 49
30% 164 381 72
Entity #23: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 206 42
95% 122 267 46
90% 122 267 48
70% 122 267 58
50% 122 267 93
40% 122 267 118
30% 122 267 140
Entity #24: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 249 34
95% 122 249 53
90% 122 249 55
70% 122 249 68
50% 122 249 105
40% 122 249 132
30% 122 249 151
Entity #3: Chains: Y - ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: Z - A-SITE MESSENGER RNA FRAGMENT rna, length: 4 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 268 23
95% 122 269 38
90% 122 269 41
70% 122 269 51
50% 122 269 91
40% 163 378 53
30% 163 378 75
Entity #6: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 230 38
95% 115 230 63
90% 115 230 66
70% 115 230 80
50% 130 293 74
40% 130 293 99
30% 130 293 119
Entity #7: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 261 29
95% 122 269 39
90% 122 269 42
70% 122 269 52
50% 163 378 39
40% 163 379 52
30% 163 379 74
Entity #8: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 268 24
95% 122 268 42
90% 122 268 44
70% 122 268 54
50% 164 382 36
40% 164 382 48
30% 164 384 71
Entity #9: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 273 18
95% 130 279 29
90% 130 279 30
70% 130 279 44
50% 130 279 86
40% 130 279 108
30% 158 328 94
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.