1IBL

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN


Sequence Similarity Clusters for the Entities in PDB 1IBL

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 273 28
95 % 147 274 41
90 % 147 274 45
70 % 147 274 56
50 % 174 338 71
40 % 174 341 79
30 % 174 341 93
Entity #11 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 269 33
95 % 146 269 46
90 % 147 273 46
70 % 147 273 57
50 % 177 399 29
40 % 178 403 38
30 % 201 512 30
Entity #12 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 91 211
95 % 146 269 51
90 % 146 269 54
70 % 146 269 65
50 % 174 393 36
40 % 174 393 47
30 % 195 499 35
Entity #13 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 267 39
95 % 146 268 54
90 % 146 268 57
70 % 146 268 69
50 % 180 400 26
40 % 180 400 37
30 % 201 500 32
Entity #14 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 269 36
95 % 146 269 50
90 % 146 269 53
70 % 146 269 64
50 % 174 393 35
40 % 197 499 19
30 % 197 499 33
Entity #15 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 217 50
95 % 146 276 40
90 % 146 276 44
70 % 174 406 22
50 % 174 411 25
40 % 174 411 35
30 % 174 411 55
Entity #16 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 270 34
95 % 146 270 47
90 % 146 270 51
70 % 146 270 61
50 % 177 398 33
40 % 177 398 46
30 % 198 500 36
Entity #17 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 268 38
95 % 146 268 55
90 % 146 268 58
70 % 146 270 62
50 % 146 270 90
40 % 146 270 112
30 % 146 270 124
Entity #18 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 272 30
95 % 150 277 39
90 % 150 277 43
70 % 150 277 55
50 % 181 406 27
40 % 181 409 36
30 % 181 409 56
Entity #19 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 264 40
95 % 146 269 52
90 % 146 269 55
70 % 146 269 66
50 % 146 271 89
40 % 146 271 110
30 % 177 394 63
Entity #2 | Chains: X
P-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 87 246
95 % 145 263 57
90 % 146 267 59
70 % 146 267 70
50 % 146 267 94
40 % 146 267 115
30 % 146 267 127
Entity #21 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 51 692
95 % 131 234 64
90 % 131 234 68
70 % 131 234 80
50 % 131 234 108
40 % 131 234 133
30 % 131 234 142
Entity #22 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 272 29
95 % 147 272 43
90 % 147 272 48
70 % 147 272 58
50 % 175 398 30
40 % 175 401 40
30 % 175 401 58
Entity #23 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 217 51
95 % 146 268 53
90 % 146 268 56
70 % 146 268 68
50 % 146 268 92
40 % 146 268 113
30 % 146 268 125
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 259 43
95 % 146 259 59
90 % 146 259 63
70 % 146 259 75
50 % 146 259 97
40 % 146 259 120
30 % 146 259 130
Entity #3 | Chains: Y
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 269 32
95 % 146 270 44
90 % 146 270 49
70 % 146 270 59
50 % 174 392 34
40 % 174 395 45
30 % 174 395 62
Entity #6 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 233 47
95 % 130 233 65
90 % 130 233 69
70 % 130 233 81
50 % 136 306 83
40 % 136 306 102
30 % 136 306 113
Entity #7 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 262 41
95 % 146 270 45
90 % 146 270 50
70 % 146 270 60
50 % 174 394 32
40 % 174 397 42
30 % 174 397 61
Entity #8 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 269 35
95 % 146 269 49
90 % 146 269 52
70 % 146 269 63
50 % 175 398 31
40 % 175 398 43
30 % 175 400 59
Entity #9 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 274 27
95 % 154 280 36
90 % 154 280 41
70 % 154 280 52
50 % 154 280 87
40 % 154 280 106
30 % 178 334 90

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.