1IBL

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN


Sequence Similarity Clusters for the Entities in PDB 1IBL

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 273 26
95 % 147 274 37
90 % 147 274 41
70 % 147 274 51
50 % 174 336 65
40 % 174 339 75
30 % 174 339 89
Entity #11 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 269 32
95 % 146 269 43
90 % 147 273 42
70 % 147 273 52
50 % 177 394 26
40 % 178 398 36
30 % 201 500 28
Entity #12 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 91 202
95 % 146 269 48
90 % 146 269 51
70 % 146 269 61
50 % 174 388 35
40 % 174 388 45
30 % 195 488 33
Entity #13 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 267 37
95 % 146 268 51
90 % 146 268 54
70 % 146 268 65
50 % 180 394 25
40 % 180 394 37
30 % 201 490 29
Entity #14 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 269 35
95 % 146 269 47
90 % 146 269 50
70 % 146 269 60
50 % 174 388 34
40 % 197 487 18
30 % 197 487 31
Entity #15 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 92 217 48
95 % 146 276 36
90 % 146 276 40
70 % 174 401 20
50 % 174 403 23
40 % 174 403 34
30 % 174 403 55
Entity #16 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 270 33
95 % 146 270 44
90 % 146 270 48
70 % 146 270 57
50 % 177 393 32
40 % 177 393 44
30 % 198 491 32
Entity #17 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 268 36
95 % 146 268 52
90 % 146 268 55
70 % 146 270 58
50 % 146 270 87
40 % 146 270 108
30 % 146 270 120
Entity #18 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 272 28
95 % 150 277 35
90 % 150 277 39
70 % 150 277 50
50 % 181 401 24
40 % 181 404 33
30 % 181 404 54
Entity #19 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 264 38
95 % 146 269 49
90 % 146 269 52
70 % 146 269 62
50 % 146 271 86
40 % 146 271 106
30 % 177 389 63
Entity #2 | Chains: X
P-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 87 234
95 % 145 263 53
90 % 146 267 56
70 % 146 267 66
50 % 146 267 90
40 % 146 267 111
30 % 146 267 123
Entity #21 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 51 647
95 % 131 234 62
90 % 131 234 66
70 % 131 234 77
50 % 131 234 103
40 % 131 234 129
30 % 131 234 140
Entity #22 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 147 272 27
95 % 147 272 40
90 % 147 272 45
70 % 147 272 54
50 % 175 393 28
40 % 175 393 39
30 % 175 393 58
Entity #23 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 217 49
95 % 146 268 50
90 % 146 268 53
70 % 146 268 64
50 % 146 268 89
40 % 146 268 110
30 % 146 268 122
Entity #24 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 259 41
95 % 146 259 56
90 % 146 259 59
70 % 146 259 69
50 % 146 259 94
40 % 146 259 116
30 % 146 259 129
Entity #3 | Chains: Y
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: Z
A-SITE MESSENGER RNA FRAGMENT rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 269 31
95 % 146 270 41
90 % 146 270 46
70 % 146 270 55
50 % 174 387 33
40 % 174 390 42
30 % 174 390 61
Entity #6 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 130 233 45
95 % 130 233 63
90 % 130 233 67
70 % 130 233 78
50 % 136 301 78
40 % 136 301 96
30 % 136 301 113
Entity #7 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 144 262 39
95 % 146 270 42
90 % 146 270 47
70 % 146 270 56
50 % 174 389 31
40 % 174 392 40
30 % 174 392 60
Entity #8 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 146 269 34
95 % 146 269 46
90 % 146 269 49
70 % 146 269 59
50 % 175 393 29
40 % 175 393 41
30 % 175 395 57
Entity #9 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 148 274 24
95 % 154 280 33
90 % 154 280 38
70 % 154 280 49
50 % 154 280 83
40 % 154 280 102
30 % 178 334 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.