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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBK
Sequence Clusters for the Sequence Entities in PDB 1IBK
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 90 158
95% 130 199 41
90% 130 199 43
70% 130 199 55
50% 150 276 41
40% 150 276 54
30% 168 328 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 197 29
95% 130 198 45
90% 130 198 47
70% 130 198 59
50% 156 282 35
40% 156 282 45
30% 174 333 45
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 199 25
95% 130 199 40
90% 130 199 42
70% 130 199 54
50% 150 276 42
40% 170 332 35
30% 170 332 46
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 166 36
95% 130 206 31
90% 130 206 33
70% 150 288 24
50% 150 288 34
40% 150 288 44
30% 150 288 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 200 22
95% 130 200 38
90% 130 200 40
70% 130 200 51
50% 153 281 39
40% 153 281 50
30% 171 333 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 198 26
95% 130 198 46
90% 130 198 48
70% 130 198 60
50% 130 198 92
40% 130 198 114
30% 130 198 137
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 202 20
95% 134 207 30
90% 134 207 32
70% 134 207 43
50% 157 289 33
40% 157 289 43
30% 157 289 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 194 30
95% 130 199 42
90% 130 199 44
70% 130 199 56
50% 130 199 89
40% 130 199 112
30% 153 279 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 80 222
95% 129 193 50
90% 130 197 49
70% 130 197 61
50% 130 197 93
40% 130 197 116
30% 130 197 138
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 49 507
95% 121 174 71
90% 121 174 75
70% 121 174 88
50% 121 174 128
40% 121 174 146
30% 121 174 164
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 202 19
95% 131 202 33
90% 131 202 36
70% 131 202 47
50% 151 279 38
40% 151 279 49
30% 151 279 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 149 54
95% 130 198 44
90% 130 198 46
70% 130 198 58
50% 130 198 91
40% 130 198 113
30% 130 198 136
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 189 32
95% 130 189 52
90% 130 189 55
70% 130 189 67
50% 130 189 111
40% 130 189 134
30% 130 189 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 199 23
95% 130 200 35
90% 130 200 38
70% 130 200 48
50% 130 200 88
40% 150 276 53
30% 150 276 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 173 48
95% 121 173 72
90% 121 173 76
70% 121 173 90
50% 126 214 76
40% 126 214 102
30% 126 214 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 192 31
95% 130 200 36
90% 130 200 39
70% 130 200 49
50% 150 276 40
40% 150 277 51
30% 150 277 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 199 24
95% 130 199 39
90% 130 199 41
70% 130 199 52
50% 151 280 37
40% 151 280 48
30% 151 282 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 204 17
95% 138 210 29
90% 138 210 31
70% 138 210 42
50% 138 210 82
40% 138 210 107
30% 155 248 87
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 203 18
95% 131 204 32
90% 131 204 34
70% 131 204 44
50% 151 246 53
40% 151 247 70
30% 151 247 94
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 199 21
95% 130 199 37
90% 131 203 35
70% 131 203 45
50% 153 282 36
40% 154 284 46
30% 173 337 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.