Sequence Similarity Clusters for the Entities in PDB 1IBK

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 48 91 217
95 % 180 271 50
90 % 180 271 55
70 % 180 271 65
50 % 208 411 35
40 % 208 411 48
30 % 235 523 35
Entity #11 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 179 269 39
95 % 180 270 53
90 % 180 270 58
70 % 180 270 68
50 % 214 420 26
40 % 214 420 38
30 % 241 527 32
Entity #12 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 271 35
95 % 180 271 49
90 % 180 271 54
70 % 180 271 64
50 % 208 414 32
40 % 237 536 19
30 % 237 536 31
Entity #13 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 121 217 51
95 % 180 278 39
90 % 180 278 44
70 % 208 421 19
50 % 208 431 24
40 % 208 431 36
30 % 208 431 55
Entity #14 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 272 33
95 % 180 272 46
90 % 180 272 51
70 % 180 272 62
50 % 211 418 31
40 % 211 418 45
30 % 238 526 34
Entity #15 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 270 36
95 % 180 270 54
90 % 180 270 59
70 % 180 278 54
50 % 180 278 91
40 % 180 278 114
30 % 180 278 123
Entity #16 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 274 30
95 % 184 279 38
90 % 184 279 43
70 % 184 279 53
50 % 215 427 25
40 % 215 432 34
30 % 215 432 54
Entity #17 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 266 40
95 % 180 271 51
90 % 180 271 56
70 % 180 271 66
50 % 180 278 90
40 % 180 278 113
30 % 211 413 63
Entity #18 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 45 87 255
95 % 179 265 56
90 % 180 269 60
70 % 180 269 69
50 % 180 269 94
40 % 180 269 117
30 % 180 269 128
Entity #19 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 51 719
95 % 163 236 65
90 % 163 236 69
70 % 163 236 81
50 % 163 236 111
40 % 163 236 135
30 % 163 236 144
Entity #2 | Chains: X
P-SITE MESSENGER RNA FRAGMENT rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 93 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 274 29
95 % 181 274 42
90 % 181 274 48
70 % 181 274 58
50 % 209 420 28
40 % 209 423 40
30 % 209 423 56
Entity #21 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 161 219 50
95 % 180 270 52
90 % 180 270 57
70 % 180 270 67
50 % 180 270 93
40 % 180 270 116
30 % 180 270 127
Entity #22 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 261 43
95 % 180 261 59
90 % 180 261 63
70 % 180 261 74
50 % 180 261 98
40 % 180 261 121
30 % 180 261 133
Entity #3 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 271 31
95 % 180 272 43
90 % 180 272 49
70 % 180 272 59
50 % 208 409 36
40 % 208 414 44
30 % 208 414 62
Entity #4 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 163 235 48
95 % 163 235 66
90 % 163 235 70
70 % 163 235 82
50 % 169 309 83
40 % 169 309 102
30 % 169 309 116
Entity #5 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 178 264 42
95 % 180 272 44
90 % 180 272 50
70 % 180 272 60
50 % 208 415 30
40 % 208 420 41
30 % 208 420 57
Entity #6 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 162 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 271 34
95 % 180 271 48
90 % 180 271 53
70 % 180 271 63
50 % 209 417 29
40 % 209 417 42
30 % 209 419 59
Entity #7 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 182 276 27
95 % 188 282 37
90 % 188 282 42
70 % 188 282 51
50 % 188 282 88
40 % 188 282 110
30 % 212 354 93
Entity #8 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 181 275 28
95 % 181 276 41
90 % 181 276 46
70 % 181 276 56
50 % 208 355 67
40 % 208 360 84
30 % 208 360 95
Entity #9 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 180 271 32
95 % 180 271 45
90 % 181 275 47
70 % 181 275 57
50 % 211 420 27
40 % 212 426 37
30 % 241 541 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.