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An Information Portal to 105097 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBK
Sequence Clusters for the Sequence Entities in PDB 1IBK
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 87 155
95% 122 189 44
90% 122 189 47
70% 122 189 57
50% 141 263 40
40% 141 263 54
30% 159 312 53
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 187 27
95% 122 188 47
90% 122 188 50
70% 122 188 60
50% 147 269 34
40% 147 269 46
30% 147 274 65
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 189 25
95% 122 189 43
90% 122 189 46
70% 122 189 56
50% 141 263 41
40% 161 316 35
30% 161 316 44
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 158 35
95% 122 196 35
90% 122 196 37
70% 141 275 24
50% 141 275 33
40% 141 275 45
30% 141 275 68
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 190 22
95% 122 190 41
90% 122 190 44
70% 122 190 54
50% 144 268 38
40% 144 268 51
30% 162 317 50
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 188 26
95% 122 188 48
90% 122 188 51
70% 122 188 61
50% 122 188 94
40% 122 188 119
30% 122 188 142
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 192 20
95% 126 197 33
90% 126 197 35
70% 126 197 47
50% 148 276 32
40% 148 276 43
30% 148 276 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 184 28
95% 122 189 45
90% 122 189 48
70% 122 189 58
50% 122 189 92
40% 122 189 117
30% 144 266 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 79 221
95% 121 183 49
90% 122 187 52
70% 122 187 62
50% 122 187 95
40% 122 187 120
30% 122 187 143
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 49 492
95% 115 168 61
90% 115 168 64
70% 115 168 80
50% 115 168 117
40% 115 168 139
30% 115 168 161
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 170 37
95% 115 170 59
90% 115 170 63
70% 115 170 78
50% 142 266 37
40% 142 266 49
30% 142 266 72
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 104 140 42
95% 122 188 46
90% 122 188 49
70% 122 188 59
50% 122 188 93
40% 122 188 118
30% 122 188 141
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 179 34
95% 122 179 53
90% 122 179 55
70% 122 179 68
50% 122 179 105
40% 122 179 132
30% 122 179 151
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 189 23
95% 122 190 38
90% 122 190 42
70% 122 190 52
50% 122 190 91
40% 141 263 53
30% 141 263 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 114 166 38
95% 114 166 63
90% 114 166 66
70% 114 166 82
50% 120 206 75
40% 120 206 100
30% 120 206 120
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 120 182 29
95% 122 190 39
90% 122 190 43
70% 122 190 53
50% 141 263 39
40% 141 264 52
30% 141 264 74
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 189 24
95% 122 189 42
90% 122 189 45
70% 122 189 55
50% 142 267 36
40% 142 267 48
30% 142 269 71
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 194 18
95% 130 200 29
90% 130 200 30
70% 130 200 44
50% 130 200 86
40% 130 200 108
30% 145 236 94
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 123 193 19
95% 123 194 36
90% 123 194 38
70% 123 194 49
50% 141 234 56
40% 141 235 74
30% 141 235 96
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 122 189 21
95% 122 189 40
90% 123 193 39
70% 123 193 51
50% 144 269 35
40% 145 271 47
30% 164 321 43
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.