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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBK
Sequence Clusters for the Sequence Entities in PDB 1IBK
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 113 134
95% 158 260 44
90% 158 260 47
70% 158 260 58
50% 197 368 41
40% 197 368 56
30% 199 404 58
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 257 29
95% 158 259 47
90% 158 259 51
70% 158 259 61
50% 203 374 34
40% 203 374 46
30% 203 379 66
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 260 26
95% 158 260 43
90% 158 260 46
70% 158 260 57
50% 197 368 42
40% 201 408 40
30% 201 408 53
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 229 36
95% 158 267 36
90% 158 267 38
70% 197 380 24
50% 197 380 33
40% 197 380 45
30% 197 380 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 261 22
95% 158 261 41
90% 158 261 43
70% 158 261 55
50% 197 370 39
40% 197 370 53
30% 199 406 57
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 259 27
95% 158 259 48
90% 158 259 52
70% 158 259 62
50% 158 259 97
40% 158 259 123
30% 158 259 141
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 263 20
95% 162 268 35
90% 162 268 37
70% 162 268 48
50% 204 381 32
40% 204 381 43
30% 204 381 68
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 255 30
95% 158 260 45
90% 158 260 48
70% 158 260 59
50% 158 260 94
40% 158 260 120
30% 197 368 78
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 92 220
95% 157 254 50
90% 158 258 53
70% 158 258 63
50% 158 258 99
40% 158 258 124
30% 158 258 142
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 49 464
95% 150 224 63
90% 150 224 67
70% 150 224 81
50% 150 224 115
40% 150 224 141
30% 150 224 162
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 226 37
95% 150 226 62
90% 150 226 65
70% 150 226 80
50% 198 371 38
40% 198 371 51
30% 198 371 75
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 198 43
95% 158 259 46
90% 158 259 50
70% 158 259 60
50% 158 259 96
40% 158 259 122
30% 158 259 140
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 241 34
95% 158 241 55
90% 158 241 58
70% 158 241 69
50% 158 241 107
40% 158 241 130
30% 158 241 151
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 260 24
95% 158 261 38
90% 158 261 41
70% 158 261 52
50% 158 261 92
40% 197 368 55
30% 197 368 77
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 222 39
95% 149 222 65
90% 149 222 69
70% 149 222 82
50% 164 285 76
40% 164 285 100
30% 164 285 124
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 253 31
95% 158 261 39
90% 158 261 42
70% 158 261 53
50% 197 368 40
40% 197 369 54
30% 197 369 76
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 260 25
95% 158 260 42
90% 158 260 44
70% 158 260 56
50% 198 372 37
40% 198 372 50
30% 198 374 72
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 265 18
95% 166 271 33
90% 166 271 35
70% 166 271 47
50% 166 271 87
40% 166 271 112
30% 192 318 94
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 264 19
95% 159 265 37
90% 159 265 39
70% 159 265 49
50% 185 313 56
40% 185 314 72
30% 185 314 96
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 260 21
95% 158 260 40
90% 159 264 40
70% 159 264 50
50% 200 374 35
40% 201 376 47
30% 204 413 52
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.