POP-OUT | CLOSE

An Information Portal to 106858 Biological Macromolecular Structures

STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBK
Sequence Clusters for the Sequence Entities in PDB 1IBK
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 90 140
95% 128 196 43
90% 128 196 45
70% 128 196 56
50% 147 270 41
40% 147 270 54
30% 165 321 50
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 194 28
95% 128 195 46
90% 128 195 48
70% 128 195 59
50% 153 276 35
40% 153 276 45
30% 171 326 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 196 26
95% 128 196 42
90% 128 196 44
70% 128 196 55
50% 147 270 42
40% 167 325 36
30% 167 325 47
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 165 35
95% 128 203 31
90% 128 203 33
70% 147 282 24
50% 147 282 34
40% 147 282 44
30% 147 282 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 197 23
95% 128 197 38
90% 128 197 40
70% 128 197 52
50% 150 275 39
40% 150 275 51
30% 168 326 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 195 27
95% 128 195 47
90% 128 195 49
70% 128 195 60
50% 128 195 92
40% 128 195 116
30% 128 195 139
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 199 19
95% 132 204 30
90% 132 204 32
70% 132 204 44
50% 154 283 33
40% 154 283 43
30% 154 283 68
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 191 29
95% 128 196 44
90% 128 196 46
70% 128 196 57
50% 128 196 89
40% 128 196 114
30% 150 273 77
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 80 221
95% 127 190 49
90% 128 194 50
70% 128 194 61
50% 128 194 93
40% 128 194 117
30% 128 194 141
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 49 496
95% 119 172 70
90% 119 172 74
70% 119 172 88
50% 119 172 125
40% 119 172 146
30% 119 172 165
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 174 47
95% 119 174 69
90% 119 174 73
70% 119 174 87
50% 148 273 38
40% 148 273 49
30% 148 273 73
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 146 54
95% 128 195 45
90% 128 195 47
70% 128 195 58
50% 128 195 91
40% 128 195 115
30% 128 195 138
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 186 32
95% 128 186 51
90% 128 186 54
70% 128 186 66
50% 128 186 110
40% 128 186 133
30% 128 186 151
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 196 24
95% 128 197 35
90% 128 197 38
70% 128 197 50
50% 128 197 88
40% 147 270 53
30% 147 270 76
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 171 48
95% 119 171 72
90% 119 171 76
70% 119 171 90
50% 124 210 76
40% 124 210 101
30% 124 210 121
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 189 30
95% 128 197 36
90% 128 197 39
70% 128 197 51
50% 147 270 40
40% 147 271 52
30% 147 271 75
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 196 25
95% 128 196 40
90% 128 196 42
70% 128 196 54
50% 148 274 37
40% 148 274 48
30% 148 276 71
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 201 17
95% 136 207 29
90% 136 207 31
70% 136 207 42
50% 136 207 81
40% 136 207 108
30% 152 244 90
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 200 18
95% 129 201 33
90% 129 201 35
70% 129 201 46
50% 148 242 55
40% 148 243 71
30% 148 243 95
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 196 22
95% 128 196 37
90% 129 200 36
70% 129 200 47
50% 150 276 36
40% 151 278 46
30% 170 330 45
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.