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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBK
Sequence Clusters for the Sequence Entities in PDB 1IBK
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 90 160
95% 135 209 41
90% 135 209 44
70% 135 209 53
50% 155 287 42
40% 155 287 52
30% 173 341 49
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 207 25
95% 135 208 44
90% 135 208 47
70% 135 208 57
50% 161 293 35
40% 161 293 45
30% 179 345 45
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 209 23
95% 135 209 40
90% 135 209 43
70% 135 209 52
50% 155 287 41
40% 175 346 32
30% 175 347 44
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 172 33
95% 135 216 30
90% 135 216 33
70% 155 298 24
50% 155 299 34
40% 155 299 44
30% 155 299 66
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 210 20
95% 135 210 38
90% 135 210 41
70% 135 210 50
50% 158 292 39
40% 158 292 49
30% 176 346 48
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 208 24
95% 135 208 45
90% 135 208 48
70% 135 209 55
50% 135 209 82
40% 135 209 108
30% 135 209 125
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 212 18
95% 139 217 29
90% 139 217 32
70% 139 217 42
50% 162 300 33
40% 162 301 43
30% 162 301 64
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 204 26
95% 135 209 42
90% 135 209 45
70% 135 209 54
50% 135 209 81
40% 135 210 107
30% 158 290 73
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 80 223
95% 134 203 47
90% 135 207 49
70% 135 207 58
50% 135 207 84
40% 135 207 111
30% 135 207 128
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 49 516
95% 125 183 53
90% 125 183 56
70% 125 183 70
50% 125 183 115
40% 125 183 138
30% 125 183 156
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 212 17
95% 136 212 33
90% 136 212 37
70% 136 212 46
50% 156 290 38
40% 156 290 48
30% 156 290 70
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 159 50
95% 135 208 43
90% 135 208 46
70% 135 208 56
50% 135 208 83
40% 135 208 109
30% 135 208 126
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 199 31
95% 135 199 49
90% 135 199 51
70% 135 199 62
50% 135 199 94
40% 135 199 117
30% 135 199 141
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 209 21
95% 135 210 35
90% 135 210 39
70% 135 210 48
50% 155 286 43
40% 155 287 51
30% 155 287 72
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 125 182 35
95% 125 182 54
90% 125 182 57
70% 125 182 71
50% 130 223 76
40% 130 223 101
30% 130 223 120
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 202 27
95% 135 210 36
90% 135 210 40
70% 135 210 49
50% 155 287 40
40% 155 288 50
30% 155 288 71
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 209 22
95% 135 209 39
90% 135 209 42
70% 135 209 51
50% 156 291 37
40% 156 291 47
30% 156 293 69
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 214 15
95% 143 220 26
90% 143 220 31
70% 143 220 41
50% 143 220 78
40% 143 220 102
30% 160 259 82
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 213 16
95% 136 214 32
90% 136 214 35
70% 136 214 44
50% 156 257 52
40% 156 258 66
30% 156 258 86
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 209 19
95% 135 209 37
90% 136 213 36
70% 136 213 45
50% 158 293 36
40% 159 295 46
30% 178 350 42
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.