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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBK
Sequence Clusters for the Sequence Entities in PDB 1IBK
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 90 156
95% 130 198 41
90% 130 198 43
70% 130 198 55
50% 150 274 41
40% 150 274 54
30% 168 326 51
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 196 28
95% 130 197 44
90% 130 197 46
70% 130 197 58
50% 156 280 35
40% 156 280 45
30% 174 331 46
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 198 24
95% 130 198 40
90% 130 198 42
70% 130 198 54
50% 150 274 42
40% 170 330 35
30% 170 330 47
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 165 35
95% 130 205 31
90% 130 205 33
70% 150 286 24
50% 150 286 34
40% 150 286 44
30% 150 286 69
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 199 21
95% 130 199 37
90% 130 199 39
70% 130 199 51
50% 153 279 39
40% 153 279 51
30% 171 331 49
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 197 25
95% 130 197 45
90% 130 197 47
70% 130 197 59
50% 130 197 92
40% 130 197 114
30% 130 197 137
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 201 19
95% 134 206 30
90% 134 206 32
70% 134 206 43
50% 157 287 33
40% 157 287 43
30% 157 287 68
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 193 29
95% 130 198 42
90% 130 198 44
70% 130 198 56
50% 130 198 90
40% 130 198 112
30% 153 277 75
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 80 222
95% 129 192 49
90% 130 196 48
70% 130 196 60
50% 130 196 93
40% 130 196 116
30% 130 196 139
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 49 505
95% 121 174 71
90% 121 174 75
70% 121 174 88
50% 121 174 128
40% 121 174 146
30% 121 174 164
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 176 45
95% 121 176 67
90% 121 176 70
70% 121 176 83
50% 151 277 38
40% 151 277 48
30% 151 277 72
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 112 148 54
95% 130 197 43
90% 130 197 45
70% 130 197 57
50% 130 197 91
40% 130 197 113
30% 130 197 136
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 188 31
95% 130 188 51
90% 130 188 54
70% 130 188 66
50% 130 188 111
40% 130 188 133
30% 130 188 153
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 198 22
95% 130 199 34
90% 130 199 37
70% 130 199 48
50% 130 199 88
40% 150 274 53
30% 150 274 74
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 173 48
95% 121 173 72
90% 121 173 76
70% 121 173 90
50% 126 213 75
40% 126 213 102
30% 126 213 122
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 191 30
95% 130 199 35
90% 130 199 38
70% 130 199 49
50% 150 274 40
40% 150 275 52
30% 150 275 73
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 198 23
95% 130 198 39
90% 130 198 41
70% 130 198 53
50% 151 278 37
40% 151 278 47
30% 151 280 71
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 203 17
95% 138 209 29
90% 138 209 31
70% 138 209 42
50% 138 209 80
40% 138 209 106
30% 155 247 87
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 202 18
95% 131 203 32
90% 131 203 34
70% 131 203 45
50% 151 245 53
40% 151 246 70
30% 151 246 94
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 198 20
95% 130 198 36
90% 131 202 35
70% 131 202 46
50% 153 280 36
40% 154 282 46
30% 173 335 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.