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STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN
Sequence Clustering and Redundancy Reduction Results
1IBK
Sequence Clusters for the Sequence Entities in PDB 1IBK
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 89 144
95% 128 195 42
90% 128 195 44
70% 128 195 55
50% 147 269 40
40% 147 269 53
30% 165 318 49
Entity #11: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 193 28
95% 128 194 45
90% 128 194 47
70% 128 194 58
50% 153 275 34
40% 153 275 45
30% 153 280 65
Entity #12: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 195 26
95% 128 195 41
90% 128 195 43
70% 128 195 54
50% 147 269 41
40% 167 322 35
30% 167 322 44
Entity #13: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 164 35
95% 128 202 32
90% 128 202 33
70% 147 281 23
50% 147 281 33
40% 147 281 44
30% 147 281 68
Entity #14: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 196 23
95% 128 196 39
90% 128 196 41
70% 128 196 52
50% 150 274 38
40% 150 274 50
30% 168 323 47
Entity #15: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 194 27
95% 128 194 46
90% 128 194 48
70% 128 194 59
50% 128 194 92
40% 128 194 115
30% 128 194 137
Entity #16: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 198 21
95% 132 203 30
90% 132 203 31
70% 132 203 43
50% 154 282 32
40% 154 282 42
30% 154 282 67
Entity #17: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 190 29
95% 128 195 43
90% 128 195 45
70% 128 195 56
50% 128 195 89
40% 128 195 113
30% 150 272 76
Entity #18: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 79 223
95% 127 189 48
90% 128 193 50
70% 128 193 61
50% 128 193 95
40% 128 193 120
30% 128 193 139
Entity #19: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 24 49 494
95% 119 172 58
90% 119 172 62
70% 119 172 76
50% 119 172 111
40% 119 172 137
30% 119 172 156
Entity #2: Chains: X - P-SITE MESSENGER RNA FRAGMENT rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #20: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 174 36
95% 119 174 57
90% 119 174 61
70% 119 174 75
50% 148 272 37
40% 148 272 49
30% 148 272 72
Entity #21: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 146 42
95% 128 194 44
90% 128 194 46
70% 128 194 57
50% 128 194 91
40% 128 194 114
30% 128 194 136
Entity #22: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 185 32
95% 128 185 51
90% 128 185 54
70% 128 185 65
50% 128 185 101
40% 128 185 127
30% 128 185 147
Entity #3: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 195 24
95% 128 196 36
90% 128 196 39
70% 128 196 50
50% 128 196 87
40% 147 269 52
30% 147 269 75
Entity #4: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 171 37
95% 119 171 59
90% 119 171 63
70% 119 171 77
50% 124 210 73
40% 124 210 97
30% 124 210 120
Entity #5: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 126 188 30
95% 128 196 37
90% 128 196 40
70% 128 196 51
50% 147 269 39
40% 147 270 51
30% 147 270 73
Entity #6: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 195 25
95% 128 195 40
90% 128 195 42
70% 128 195 53
50% 148 273 36
40% 148 273 48
30% 148 275 70
Entity #7: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 200 17
95% 136 206 29
90% 136 206 30
70% 136 206 40
50% 136 206 80
40% 136 206 105
30% 152 243 90
Entity #8: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 199 20
95% 129 200 33
90% 129 200 34
70% 129 200 47
50% 148 241 54
40% 148 242 70
30% 148 242 94
Entity #9: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 128 195 22
95% 128 195 38
90% 129 199 35
70% 129 199 48
50% 150 275 35
40% 151 277 46
30% 170 327 43
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.