Sequence Similarity Clusters for the Entities in PDB 1IBG

Entity #1 | Chains: L
IGG2B-KAPPA 40-50 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60643
95 % 6 9 4460 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 2.1
PDBFlex
90 % 47 101 155
70 % 1459 2362 1
50 % 2962 4781 1
40 % 2962 4781 1
30 % 3435 5635 1
Entity #2 | Chains: H
IGG2B-KAPPA 40-50 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60642
95 % 1 1 42582
90 % 1 1 40536
70 % 1429 2311 2
50 % 2963 4781 1
40 % 2963 4781 1
30 % 3436 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures