Sequence Similarity Clusters for the Entities in PDB 1IBG

Entity #1 | Chains: L
IGG2B-KAPPA 40-50 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59875
95 % 6 9 4389 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 2.1
PDBFlex
90 % 46 99 152
70 % 1404 2287 1
50 % 2854 4633 1
40 % 2854 4633 1
30 % 3312 5461 1
Entity #2 | Chains: H
IGG2B-KAPPA 40-50 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59874
95 % 1 1 42029
90 % 1 1 40045
70 % 1381 2244 2
50 % 2855 4633 1
40 % 2855 4633 1
30 % 3313 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.