Sequence Similarity Clusters for the Entities in PDB 1IBG

Entity #1 | Chains: L
IGG2B-KAPPA 40-50 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59097
95 % 6 9 4346 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 2.1
PDBFlex
90 % 45 98 151
70 % 1392 2265 1
50 % 2831 4589 1
40 % 2831 4589 1
30 % 3278 5394 1
Entity #2 | Chains: H
IGG2B-KAPPA 40-50 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59096
95 % 1 1 41474
90 % 1 1 39534
70 % 1370 2223 2
50 % 2832 4589 1
40 % 2832 4589 1
30 % 3279 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.