Sequence Similarity Clusters for the Entities in PDB 1IBG

Entity #1 | Chains: L
IGG2B-KAPPA 40-50 FAB (LIGHT CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50885
95 % 6 12 2866 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 2.1
PDBFlex
90 % 50 108 147
70 % 1553 2519 1
50 % 3158 5107 1
40 % 3592 5756 1
30 % 4444 7175 1
Entity #2 | Chains: H
IGG2B-KAPPA 40-50 FAB (HEAVY CHAIN) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50886
95 % 1 1 42020
90 % 1 1 40025
70 % 1527 2478 2
50 % 3159 5107 1
40 % 3593 5756 1
30 % 4445 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures