Sequence Similarity Clusters for the Entities in PDB 1IAO

Entity #1 | Chains: A
MHC CLASS II I-AD protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 5194
95 % 7 10 4640 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 19 26 1435
70 % 35 48 705
50 % 133 170 175
40 % 133 170 188
30 % 274 353 85
Entity #2 | Chains: B
MHC CLASS II I-AD protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 64632
95 % 1 1 52458
90 % 13 17 3119
70 % 134 169 151
50 % 134 171 174
40 % 134 171 187
30 % 275 353 85

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures