Sequence Similarity Clusters for the Entities in PDB 1IAO

Entity #1 | Chains: A
MHC CLASS II I-AD protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5119
95 % 4 7 5823 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 16 23 1459
70 % 31 44 748
50 % 113 149 176
40 % 113 149 192
30 % 233 310 98
Entity #2 | Chains: B
MHC CLASS II I-AD protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59399
95 % 1 1 41757
90 % 10 14 3567
70 % 107 140 161
50 % 113 149 175
40 % 113 149 191
30 % 234 310 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.