Sequence Similarity Clusters for the Entities in PDB 1IAO

Entity #1 | Chains: A
MHC CLASS II I-AD protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5204
95 % 4 7 5907 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 16 23 1477
70 % 31 44 758
50 % 113 149 180
40 % 113 149 196
30 % 233 310 100
Entity #2 | Chains: B
MHC CLASS II I-AD protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60156
95 % 1 1 42306
90 % 10 14 3623
70 % 107 140 166
50 % 113 149 179
40 % 113 149 195
30 % 234 310 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures