Sequence Similarity Clusters for the Entities in PDB 1IAO

Entity #1 | Chains: A
MHC CLASS II I-AD protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 9 4211
95 % 7 10 4616 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 19 26 1420
70 % 35 48 703
50 % 125 161 184
40 % 125 161 195
30 % 257 334 98
Entity #2 | Chains: B
MHC CLASS II I-AD protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61780
95 % 1 1 43375
90 % 13 17 3103
70 % 119 152 161
50 % 125 161 183
40 % 125 161 194
30 % 258 334 98

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures