Sequence Similarity Clusters for the Entities in PDB 1IAO

Entity #1 | Chains: A
MHC CLASS II I-AD protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5039
95 % 4 7 5737 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 16 23 1441
70 % 31 44 739
50 % 110 146 177
40 % 110 146 193
30 % 227 304 100
Entity #2 | Chains: B
MHC CLASS II I-AD protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58627
95 % 1 1 41204
90 % 10 14 3529
70 % 104 137 162
50 % 110 146 176
40 % 110 146 192
30 % 228 304 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.