Sequence Similarity Clusters for the Entities in PDB 1IAK

Entity #1 | Chains: A
MHC CLASS II I-AK protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21475
95 % 1 16 2316 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 1 23 1459
70 % 3 44 748
50 % 13 149 176
40 % 13 149 192
30 % 25 310 98
Entity #2 | Chains: B
MHC CLASS II I-AK protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 42051
95 % 1 7 7797 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.9
PDBFlex
90 % 1 14 3567
70 % 12 140 161
50 % 13 149 175
40 % 13 149 191
30 % 26 310 98
Entity #3 | Chains: P
MHC CLASS II I-AK protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.