Sequence Similarity Clusters for the Entities in PDB 1IAK

Entity #1 | Chains: A
MHC CLASS II I-AK protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21099
95 % 1 16 2288 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 1 23 1440
70 % 3 44 739
50 % 11 146 178
40 % 11 146 194
30 % 21 304 100
Entity #2 | Chains: B
MHC CLASS II I-AK protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 41410
95 % 1 7 7678
90 % 1 14 3521
70 % 10 137 163
50 % 11 146 177
40 % 11 146 193
30 % 22 304 100
Entity #3 | Chains: P
MHC CLASS II I-AK protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.