Sequence Similarity Clusters for the Entities in PDB 1IAK

Entity #1 | Chains: A
MHC CLASS II I-AK protein, length: 199 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 21999
95 % 1 16 2442 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.8
PDBFlex
90 % 3 26 1420
70 % 5 48 700
50 % 15 161 184
40 % 15 161 196
30 % 29 334 101
Entity #2 | Chains: B
MHC CLASS II I-AK protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45203
95 % 1 7 7885 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 17 3102
70 % 15 159 156
50 % 15 161 185
40 % 15 161 197
30 % 30 334 101
Entity #3 | Chains: P
MHC CLASS II I-AK protein, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures