Sequence Similarity Clusters for the Entities in PDB 1IAI

Entity #1 | Chains: L
IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59388
95 % 7 14 3477 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 45 68 416
70 % 1584 2264 1
50 % 3214 4587 1
40 % 3214 4587 1
30 % 3767 5392 1
Entity #2 | Chains: H
IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58813
95 % 1 1 41305
90 % 13 14 3515
70 % 1552 2222 2
50 % 3215 4587 1
40 % 3215 4587 1
30 % 3768 5392 1
Entity #3 | Chains: M
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27064
95 % 1 3 18008 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.9
PDBFlex
90 % 67 145 141
70 % 1585 2264 1
50 % 3216 4587 1
40 % 3216 4587 1
30 % 3769 5392 1
Entity #4 | Chains: I
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26988
95 % 1 2 22487 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 1 2 21799
70 % 1553 2222 2
50 % 3217 4587 1
40 % 3217 4587 1
30 % 3770 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.