Sequence Similarity Clusters for the Entities in PDB 1IAI

Entity #1 | Chains: L
IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60244
95 % 7 14 3525 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 45 69 407
70 % 1597 2287 1
50 % 3240 4633 1
40 % 3240 4633 1
30 % 3808 5461 1
Entity #2 | Chains: H
IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59660
95 % 1 1 41913
90 % 13 14 3562
70 % 1564 2244 2
50 % 3241 4633 1
40 % 3241 4633 1
30 % 3809 5461 1
Entity #3 | Chains: M
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27550
95 % 1 3 18343 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.9
PDBFlex
90 % 67 145 141
70 % 1598 2287 1
50 % 3242 4633 1
40 % 3242 4633 1
30 % 3810 5461 1
Entity #4 | Chains: I
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27472
95 % 1 2 22918 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 1 2 22208
70 % 1565 2244 2
50 % 3243 4633 1
40 % 3243 4633 1
30 % 3811 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.