Sequence Similarity Clusters for the Entities in PDB 1IAI

Entity #1 | Chains: L
IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62671
95 % 7 18 2936
90 % 48 77 405
70 % 1738 2474 1
50 % 3525 5011 1
40 % 3525 5011 1
30 % 4181 5941 1
Entity #2 | Chains: H
IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62048
95 % 1 1 43536
90 % 13 14 3741
70 % 1698 2424 2
50 % 3526 5011 1
40 % 3526 5011 1
30 % 4182 5941 1
Entity #3 | Chains: M
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28738
95 % 1 3 19140 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.9
PDBFlex
90 % 69 148 144
70 % 1739 2474 1
50 % 3527 5011 1
40 % 3527 5011 1
30 % 4183 5941 1
Entity #4 | Chains: I
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28659
95 % 1 2 23858 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 1 2 23088
70 % 1699 2424 2
50 % 3528 5011 1
40 % 3528 5011 1
30 % 4184 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures