Sequence Similarity Clusters for the Entities in PDB 1IAI

Entity #1 | Chains: L
IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61872
95 % 7 18 2890
90 % 47 76 396
70 % 1696 2416 1
50 % 3438 4892 1
40 % 3438 4892 1
30 % 4039 5759 1
Entity #2 | Chains: H
IDIOTYPIC FAB 730.1.4 (IGG1) OF VIRUS NEUTRALIZING ANTIBODY protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61253
95 % 1 1 43009
90 % 13 14 3684
70 % 1656 2366 2
50 % 3439 4892 1
40 % 3439 4892 1
30 % 4040 5759 1
Entity #3 | Chains: M
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28336
95 % 1 3 18852 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.9
PDBFlex
90 % 69 148 140
70 % 1697 2416 1
50 % 3440 4892 1
40 % 3440 4892 1
30 % 4041 5759 1
Entity #4 | Chains: I
ANTI-IDIOTYPIC FAB 409.5.3 (IGG2A) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28257
95 % 1 2 23528 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 1.0
PDBFlex
90 % 1 2 22773
70 % 1657 2366 2
50 % 3441 4892 1
40 % 3441 4892 1
30 % 4042 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures