Sequence Similarity Clusters for the Entities in PDB 1I9R

Entity #1 | Chains: A,B,C
CD40 LIGAND protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4383
95 % 3 4 5171 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 4 5195
70 % 3 4 5107
50 % 3 4 4880
40 % 3 4 4621
30 % 3 4 4233
Entity #2 | Chains: H,K,X
IMMUNOGLOBULIN H protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27612
95 % 1 1 23033 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 17914
70 % 1894 2280 2
50 % 3922 4713 1
40 % 3922 4713 1
30 % 4658 5567 1
Entity #3 | Chains: L,M,Y
IMMUNOGLOBULIN L protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27661
95 % 1 1 23061 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 603 720 3
70 % 1933 2327 1
50 % 3923 4713 1
40 % 3923 4713 1
30 % 4659 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.