Sequence Similarity Clusters for the Entities in PDB 1I9R

Entity #1 | Chains: A,B,C
CD40 LIGAND protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 4128
95 % 3 4 4889
90 % 3 4 4906
70 % 3 4 4833
50 % 3 4 4644
40 % 3 4 4412
30 % 3 4 4036
Entity #2 | Chains: H,K,X
IMMUNOGLOBULIN H protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26338
95 % 1 1 21964
90 % 1 1 21312
70 % 1807 2145 1
50 % 3740 4435 1
40 % 3740 4435 1
30 % 4421 5225 1
Entity #3 | Chains: L,M,Y
IMMUNOGLOBULIN L protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26387
95 % 1 1 21992
90 % 559 665 3
70 % 1534 1803 2
50 % 3741 4435 1
40 % 3741 4435 1
30 % 4422 5225 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.