Sequence Similarity Clusters for the Entities in PDB 1I9R

Entity #1 | Chains: A,B,C
CD40 LIGAND protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4468
95 % 3 4 5257 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 4 5278
70 % 3 4 5185
50 % 3 4 4958
40 % 3 4 4691
30 % 3 4 4292
Entity #2 | Chains: H,K,X
IMMUNOGLOBULIN H protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28032
95 % 1 1 23376 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 2 2 18179
70 % 1947 2342 2
50 % 4034 4843 1
40 % 4034 4843 1
30 % 4777 5705 1
Entity #3 | Chains: L,M,Y
IMMUNOGLOBULIN L protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 28081
95 % 1 1 23404 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 624 746 3
70 % 1989 2392 1
50 % 4035 4843 1
40 % 4035 4843 1
30 % 4778 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures