Sequence Similarity Clusters for the Entities in PDB 1I9R

Entity #1 | Chains: A,B,C
CD40 LIGAND protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 4204
95 % 3 4 4974 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 3 4 4993
70 % 3 4 4928
50 % 3 4 4727
40 % 3 4 4478
30 % 3 4 4104
Entity #2 | Chains: H,K,X
IMMUNOGLOBULIN H protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 26746
95 % 1 1 22312
90 % 1 1 21639
70 % 1840 2197 1
50 % 3804 4537 1
40 % 3804 4537 1
30 % 4495 5342 1
Entity #3 | Chains: L,M,Y
IMMUNOGLOBULIN L protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26795
95 % 1 1 22340 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 571 683 3
70 % 1560 1841 2
50 % 3805 4537 1
40 % 3805 4537 1
30 % 4496 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.