Sequence Similarity Clusters for the Entities in PDB 1I9R

Entity #1 | Chains: A,B,C
CD40 LIGAND protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 4289
95 % 3 4 5073
90 % 3 4 5090
70 % 3 4 5029
50 % 3 4 4815
40 % 3 4 4558
30 % 3 4 4179
Entity #2 | Chains: H,K,X
IMMUNOGLOBULIN H protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27256
95 % 1 1 22741
90 % 1 1 22047
70 % 1866 2238 2
50 % 3856 4619 1
40 % 3856 4619 1
30 % 4563 5440 1
Entity #3 | Chains: L,M,Y
IMMUNOGLOBULIN L protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27305
95 % 1 1 22769
90 % 584 697 3
70 % 1900 2280 1
50 % 3857 4619 1
40 % 3857 4619 1
30 % 4564 5440 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.