Sequence Similarity Clusters for the Entities in PDB 1I97

Entity #1 | Chains: A
16S RRNA rna, length: 1514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 270 38
95 % 233 271 53 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 233 271 58
70 % 233 271 70
50 % 281 432 28
40 % 281 432 41
30 % 318 545 34
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 272 36
95 % 233 272 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 233 272 54
70 % 233 272 66
50 % 274 426 35
40 % 313 557 19
30 % 313 557 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 172 218 54
95 % 233 279 39 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 233 279 45
70 % 274 430 21
50 % 274 443 26
40 % 274 443 39
30 % 274 443 58
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 273 34
95 % 233 273 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 233 273 52
70 % 233 273 63
50 % 277 430 34
40 % 277 430 46
30 % 314 546 37
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 271 37
95 % 233 271 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 233 271 60
70 % 233 284 54
50 % 233 284 93
40 % 233 284 116
30 % 233 284 126
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 233 275 31
95 % 238 280 38
90 % 238 280 44
70 % 238 280 56
50 % 282 439 27
40 % 282 444 37
30 % 282 444 57
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 267 41
95 % 233 272 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 233 272 56
70 % 233 272 68
50 % 233 282 94
40 % 233 282 117
30 % 277 423 65
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 24235
95 % 3 4 20691 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 232 270 61
70 % 232 270 71
50 % 232 270 98
40 % 232 270 121
30 % 232 270 129
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 51 741
95 % 208 237 69 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 208 237 71
70 % 208 237 86
50 % 208 237 117
40 % 208 237 141
30 % 208 237 146
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 235 275 30
95 % 235 275 43 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 235 275 49
70 % 235 275 60
50 % 276 432 30
40 % 276 435 42
30 % 276 435 59
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 272 32
95 % 233 273 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 233 273 50
70 % 233 273 61
50 % 274 419 37
40 % 274 424 47
30 % 274 424 64
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 197 220 53
95 % 233 271 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 233 271 57
70 % 233 271 69
50 % 233 271 97
40 % 233 271 119
30 % 233 271 128
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 230 262 43
95 % 230 262 59
90 % 230 262 63
70 % 230 262 76
50 % 230 262 104
40 % 230 262 127
30 % 230 262 134
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 207 236 49
95 % 207 236 70 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 207 236 72
70 % 207 236 87
50 % 226 310 86
40 % 226 310 106
30 % 226 310 120
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 231 265 42
95 % 234 273 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 234 273 51
70 % 234 273 62
50 % 275 427 32
40 % 275 432 43
30 % 275 432 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 234 272 35
95 % 234 272 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 234 272 53
70 % 234 272 64
50 % 276 427 33
40 % 276 427 45
30 % 276 429 63
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 236 277 28
95 % 242 283 37 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 242 283 42
70 % 242 283 52
50 % 242 283 92
40 % 242 283 115
30 % 266 366 95
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 235 276 29
95 % 235 277 40 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 235 277 46
70 % 235 277 57
50 % 263 367 67
40 % 263 372 85
30 % 263 372 97
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 23366
95 % 3 4 20062 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 235 276 47
70 % 235 276 58
50 % 278 432 29
40 % 279 438 40
30 % 318 562 32
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 91 233
95 % 233 272 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 233 272 55
70 % 233 272 67
50 % 274 421 36
40 % 274 421 48
30 % 311 546 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures