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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1I97
Sequence Clusters for the Sequence Entities in PDB 1I97
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 218 36
95% 194 219 51
90% 194 219 55
70% 194 219 67
50% 234 307 31
40% 234 307 42
30% 254 363 43
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 220 34
95% 194 220 47
90% 194 220 51
70% 194 220 62
50% 228 301 41
40% 250 364 30
30% 250 365 42
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 183 46
95% 194 227 38
90% 194 227 42
70% 228 312 22
50% 228 313 30
40% 228 313 41
30% 228 313 56
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 221 32
95% 194 221 45
90% 194 221 49
70% 194 221 60
50% 231 306 38
40% 231 306 50
30% 251 364 46
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 219 35
95% 194 219 52
90% 194 219 56
70% 194 220 65
50% 194 220 92
40% 194 220 114
30% 194 220 127
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 223 29
95% 199 228 26
90% 199 228 31
70% 199 228 43
50% 236 314 29
40% 236 315 38
30% 236 315 54
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 215 37
95% 194 220 49
90% 194 220 53
70% 194 220 64
50% 194 220 91
40% 194 221 112
30% 231 304 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 19147
95% 3 4 16511
90% 193 218 58
70% 193 218 69
50% 193 218 94
40% 193 218 116
30% 193 218 129
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 49 526
95% 176 194 64
90% 176 194 66
70% 176 194 79
50% 176 194 112
40% 176 194 131
30% 176 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 223 27
95% 196 223 41
90% 196 223 46
70% 196 223 57
50% 230 304 36
40% 230 304 48
30% 230 304 66
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 220 30
95% 194 221 42
90% 194 221 47
70% 194 221 58
50% 228 300 40
40% 228 301 51
30% 228 301 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 170 49
95% 194 219 50
90% 194 219 54
70% 194 219 66
50% 194 219 93
40% 194 219 115
30% 194 219 128
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 210 40
95% 191 210 59
90% 191 210 62
70% 191 210 73
50% 191 210 99
40% 191 210 121
30% 191 210 135
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 193 45
95% 175 193 65
90% 175 193 67
70% 175 193 80
50% 194 237 76
40% 194 237 101
30% 194 237 118
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 213 38
95% 195 221 43
90% 195 221 48
70% 195 221 59
50% 229 301 39
40% 229 302 49
30% 229 302 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 220 33
95% 195 220 46
90% 195 220 50
70% 195 220 61
50% 230 305 35
40% 230 305 47
30% 230 307 62
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 225 24
95% 203 231 24
90% 203 231 29
70% 203 231 41
50% 203 231 83
40% 203 231 107
30% 220 270 79
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 224 26
95% 196 225 40
90% 196 225 44
70% 196 225 55
50% 217 268 51
40% 217 269 62
30% 217 269 81
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18426
95% 3 4 15991
90% 196 224 45
70% 196 224 56
50% 232 307 34
40% 233 309 43
30% 254 368 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 90 177
95% 194 220 48
90% 194 220 52
70% 194 220 63
50% 228 301 42
40% 228 301 52
30% 248 359 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.