POP-OUT | CLOSE

An Information Portal to 108124 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1I97
Sequence Clusters for the Sequence Entities in PDB 1I97
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 197 29
95% 173 198 45
90% 173 198 47
70% 173 198 59
50% 212 282 35
40% 212 282 45
30% 232 333 45
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 199 25
95% 173 199 40
90% 173 199 42
70% 173 199 54
50% 206 276 42
40% 228 332 35
30% 228 332 46
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 133 166 36
95% 173 206 31
90% 173 206 33
70% 206 288 24
50% 206 288 34
40% 206 288 44
30% 206 288 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 200 22
95% 173 200 38
90% 173 200 40
70% 173 200 51
50% 209 281 39
40% 209 281 50
30% 229 333 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 198 26
95% 173 198 46
90% 173 198 48
70% 173 198 60
50% 173 198 92
40% 173 198 114
30% 173 198 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 202 20
95% 178 207 30
90% 178 207 32
70% 178 207 43
50% 214 289 33
40% 214 289 43
30% 214 289 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 194 30
95% 173 199 42
90% 173 199 44
70% 173 199 56
50% 173 199 89
40% 173 199 112
30% 209 279 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18583
95% 3 4 16035
90% 172 197 49
70% 172 197 61
50% 172 197 93
40% 172 197 116
30% 172 197 138
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 49 507
95% 156 174 71
90% 156 174 75
70% 156 174 88
50% 156 174 128
40% 156 174 146
30% 156 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 202 19
95% 175 202 33
90% 175 202 36
70% 175 202 47
50% 208 279 38
40% 208 279 49
30% 208 279 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 199 23
95% 173 200 35
90% 173 200 38
70% 173 200 48
50% 173 200 88
40% 206 276 53
30% 206 276 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 149 54
95% 173 198 44
90% 173 198 46
70% 173 198 58
50% 173 198 91
40% 173 198 113
30% 173 198 136
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 189 32
95% 170 189 52
90% 170 189 55
70% 170 189 67
50% 170 189 111
40% 170 189 134
30% 170 189 153
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 173 48
95% 155 173 72
90% 155 173 76
70% 155 173 90
50% 173 214 76
40% 173 214 102
30% 173 214 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 192 31
95% 174 200 36
90% 174 200 39
70% 174 200 49
50% 207 276 40
40% 207 277 51
30% 207 277 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 199 24
95% 174 199 39
90% 174 199 41
70% 174 199 52
50% 208 280 37
40% 208 280 48
30% 208 282 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 204 17
95% 182 210 29
90% 182 210 31
70% 182 210 42
50% 182 210 82
40% 182 210 107
30% 199 248 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 203 18
95% 175 204 32
90% 175 204 34
70% 175 204 44
50% 196 246 53
40% 196 247 70
30% 196 247 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 17884
95% 3 4 15533
90% 175 203 35
70% 175 203 45
50% 210 282 36
40% 211 284 46
30% 232 337 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 90 158
95% 173 199 41
90% 173 199 43
70% 173 199 55
50% 206 276 41
40% 206 276 54
30% 226 328 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.