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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1I97
Sequence Clusters for the Sequence Entities in PDB 1I97
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 204 25
95% 180 205 45
90% 180 205 47
70% 180 205 57
50% 219 290 35
40% 219 290 45
30% 239 342 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 206 23
95% 180 206 41
90% 180 206 43
70% 180 206 52
50% 213 284 41
40% 235 343 34
30% 235 344 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 139 172 33
95% 180 213 31
90% 180 213 34
70% 213 295 24
50% 213 296 34
40% 213 296 44
30% 213 296 67
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 207 20
95% 180 207 39
90% 180 207 41
70% 180 207 50
50% 216 289 39
40% 216 289 49
30% 236 343 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 205 24
95% 180 205 46
90% 180 205 48
70% 180 206 55
50% 180 206 85
40% 180 206 110
30% 180 206 129
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 209 18
95% 185 214 29
90% 185 214 32
70% 185 214 42
50% 221 297 33
40% 221 298 43
30% 221 298 65
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 201 29
95% 180 206 43
90% 180 206 45
70% 180 206 54
50% 180 206 84
40% 180 207 109
30% 216 287 74
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18721
95% 3 4 16155
90% 179 204 49
70% 179 204 58
50% 179 204 87
40% 179 204 112
30% 179 204 131
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 49 515
95% 162 180 55
90% 162 180 57
70% 162 180 72
50% 162 180 119
40% 162 180 143
30% 162 180 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 209 17
95% 182 209 33
90% 182 209 37
70% 182 209 46
50% 215 287 38
40% 215 287 48
30% 215 287 71
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 206 21
95% 180 207 35
90% 180 207 38
70% 180 207 47
50% 213 283 43
40% 213 284 51
30% 213 284 73
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 156 52
95% 180 205 44
90% 180 205 46
70% 180 205 56
50% 180 205 86
40% 180 205 111
30% 180 205 130
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 196 32
95% 177 196 51
90% 177 196 53
70% 177 196 64
50% 177 196 97
40% 177 196 120
30% 177 196 143
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 179 36
95% 161 179 56
90% 161 179 59
70% 161 179 73
50% 179 220 77
40% 179 220 100
30% 179 220 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 199 30
95% 181 207 37
90% 181 207 40
70% 181 207 49
50% 214 284 40
40% 214 285 50
30% 214 285 72
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 181 206 22
95% 181 206 40
90% 181 206 42
70% 181 206 51
50% 215 288 37
40% 215 288 47
30% 215 290 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 183 211 15
95% 189 217 28
90% 189 217 31
70% 189 217 41
50% 189 217 78
40% 189 217 102
30% 206 256 85
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 210 16
95% 182 211 32
90% 182 211 35
70% 182 211 44
50% 203 254 51
40% 203 255 67
30% 203 255 88
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18014
95% 3 4 15643
90% 182 210 36
70% 182 210 45
50% 217 290 36
40% 218 292 46
30% 239 347 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 90 160
95% 180 206 42
90% 180 206 44
70% 180 206 53
50% 213 284 42
40% 213 284 52
30% 233 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.