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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1I97
Sequence Clusters for the Sequence Entities in PDB 1I97
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 169 194 28
95% 170 195 46
90% 170 195 48
70% 170 195 59
50% 208 276 35
40% 208 276 45
30% 228 326 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 196 26
95% 170 196 42
90% 170 196 44
70% 170 196 55
50% 202 270 42
40% 224 325 36
30% 224 325 47
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 132 165 35
95% 170 203 31
90% 170 203 33
70% 202 282 24
50% 202 282 34
40% 202 282 44
30% 202 282 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 197 23
95% 170 197 38
90% 170 197 40
70% 170 197 52
50% 205 275 39
40% 205 275 51
30% 225 326 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 195 27
95% 170 195 47
90% 170 195 49
70% 170 195 60
50% 170 195 92
40% 170 195 116
30% 170 195 139
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 199 19
95% 175 204 30
90% 175 204 32
70% 175 204 44
50% 210 283 33
40% 210 283 43
30% 210 283 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 191 29
95% 170 196 44
90% 170 196 46
70% 170 196 57
50% 170 196 89
40% 170 196 114
30% 205 273 77
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18382
95% 3 4 15884
90% 169 194 50
70% 169 194 61
50% 169 194 93
40% 169 194 117
30% 169 194 141
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 49 496
95% 154 172 70
90% 154 172 74
70% 154 172 88
50% 154 172 125
40% 154 172 146
30% 154 172 165
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 174 47
95% 154 174 69
90% 154 174 73
70% 154 174 87
50% 204 273 38
40% 204 273 49
30% 204 273 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 196 24
95% 170 197 35
90% 170 197 38
70% 170 197 50
50% 170 197 88
40% 202 270 53
30% 202 270 76
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 146 54
95% 170 195 45
90% 170 195 47
70% 170 195 58
50% 170 195 91
40% 170 195 115
30% 170 195 138
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 186 32
95% 167 186 51
90% 167 186 54
70% 167 186 66
50% 167 186 110
40% 167 186 133
30% 167 186 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 153 171 48
95% 153 171 72
90% 153 171 76
70% 153 171 90
50% 171 210 76
40% 171 210 101
30% 171 210 121
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 189 30
95% 171 197 36
90% 171 197 39
70% 171 197 51
50% 203 270 40
40% 203 271 52
30% 203 271 75
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 196 25
95% 171 196 40
90% 171 196 42
70% 171 196 54
50% 204 274 37
40% 204 274 48
30% 204 276 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 201 17
95% 179 207 29
90% 179 207 31
70% 179 207 42
50% 179 207 81
40% 179 207 108
30% 195 244 90
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 200 18
95% 172 201 33
90% 172 201 35
70% 172 201 46
50% 192 242 55
40% 192 243 71
30% 192 243 95
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 17688
95% 3 4 15387
90% 172 200 36
70% 172 200 47
50% 206 276 36
40% 207 278 46
30% 228 330 45
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 90 140
95% 170 196 43
90% 170 196 45
70% 170 196 56
50% 202 270 41
40% 202 270 54
30% 222 321 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.