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An Information Portal to 105025 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1I97
Sequence Clusters for the Sequence Entities in PDB 1I97
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 233 265 27
95% 235 267 47
90% 235 267 49
70% 235 267 59
50% 307 384 34
40% 307 384 46
30% 307 389 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 268 25
95% 235 268 43
90% 235 268 45
70% 235 268 55
50% 301 378 41
40% 345 454 34
30% 345 454 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 237 35
95% 235 275 35
90% 235 275 37
70% 301 390 24
50% 301 390 33
40% 301 390 45
30% 301 390 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 269 22
95% 235 269 41
90% 235 269 43
70% 235 269 53
50% 301 380 38
40% 301 380 51
30% 343 452 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 267 26
95% 235 267 48
90% 235 267 50
70% 235 267 60
50% 235 267 93
40% 235 267 119
30% 235 267 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 271 20
95% 240 276 32
90% 240 276 34
70% 240 276 47
50% 309 391 32
40% 309 391 43
30% 309 391 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 263 28
95% 235 268 45
90% 235 268 47
70% 235 268 57
50% 235 268 91
40% 235 268 117
30% 301 378 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 17901
95% 3 4 15523
90% 234 266 51
70% 234 266 61
50% 234 266 94
40% 234 266 120
30% 234 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 49 486
95% 214 232 61
90% 214 232 64
70% 214 232 78
50% 214 232 115
40% 214 232 139
30% 214 232 160
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 214 234 37
95% 214 234 59
90% 214 234 63
70% 214 234 77
50% 303 381 37
40% 303 381 49
30% 303 381 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 235 268 23
95% 235 269 38
90% 235 269 41
70% 235 269 51
50% 235 269 90
40% 301 378 53
30% 301 378 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 206 42
95% 235 267 46
90% 235 267 48
70% 235 267 58
50% 235 267 92
40% 235 267 118
30% 235 267 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 230 249 34
95% 230 249 53
90% 230 249 55
70% 230 249 67
50% 230 249 104
40% 230 249 132
30% 230 249 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 230 38
95% 212 230 63
90% 212 230 66
70% 212 230 80
50% 252 293 73
40% 252 293 99
30% 252 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 233 261 29
95% 236 269 39
90% 236 269 42
70% 236 269 52
50% 302 378 39
40% 302 379 52
30% 302 379 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 268 24
95% 236 268 42
90% 236 268 44
70% 236 268 54
50% 303 382 36
40% 303 382 48
30% 303 384 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 273 18
95% 244 279 29
90% 244 279 30
70% 244 279 44
50% 244 279 84
40% 244 279 106
30% 272 328 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 237 272 19
95% 237 273 36
90% 237 273 38
70% 237 273 49
50% 266 323 56
40% 266 324 73
30% 266 324 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 17211
95% 3 4 15033
90% 237 272 39
70% 237 272 50
50% 305 384 35
40% 306 386 47
30% 349 459 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 113 150
95% 235 268 44
90% 235 268 46
70% 235 268 56
50% 301 378 40
40% 301 378 54
30% 343 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.