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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1I97
Sequence Clusters for the Sequence Entities in PDB 1I97
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 257 29
95% 227 259 47
90% 227 259 51
70% 227 259 61
50% 297 374 34
40% 297 374 46
30% 297 379 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 260 26
95% 227 260 43
90% 227 260 46
70% 227 260 57
50% 291 368 42
40% 301 408 40
30% 301 408 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 229 36
95% 227 267 36
90% 227 267 38
70% 291 380 24
50% 291 380 33
40% 291 380 45
30% 291 380 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 261 22
95% 227 261 41
90% 227 261 43
70% 227 261 55
50% 291 370 39
40% 291 370 53
30% 299 406 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 259 27
95% 227 259 48
90% 227 259 52
70% 227 259 62
50% 227 259 97
40% 227 259 123
30% 227 259 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 263 20
95% 232 268 35
90% 232 268 37
70% 232 268 48
50% 299 381 32
40% 299 381 43
30% 299 381 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 255 30
95% 227 260 45
90% 227 260 48
70% 227 260 59
50% 227 260 94
40% 227 260 120
30% 291 368 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 17695
95% 3 4 15352
90% 226 258 53
70% 226 258 63
50% 226 258 99
40% 226 258 124
30% 226 258 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 49 464
95% 206 224 63
90% 206 224 67
70% 206 224 81
50% 206 224 115
40% 206 224 141
30% 206 224 162
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 206 226 37
95% 206 226 62
90% 206 226 65
70% 206 226 80
50% 293 371 38
40% 293 371 51
30% 293 371 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 260 24
95% 227 261 38
90% 227 261 41
70% 227 261 52
50% 227 261 92
40% 291 368 55
30% 291 368 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 186 198 43
95% 227 259 46
90% 227 259 50
70% 227 259 60
50% 227 259 96
40% 227 259 122
30% 227 259 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 222 241 34
95% 222 241 55
90% 222 241 58
70% 222 241 69
50% 222 241 107
40% 222 241 130
30% 222 241 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 222 39
95% 204 222 65
90% 204 222 69
70% 204 222 82
50% 244 285 76
40% 244 285 100
30% 244 285 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 253 31
95% 228 261 39
90% 228 261 42
70% 228 261 53
50% 292 368 40
40% 292 369 54
30% 292 369 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 260 25
95% 228 260 42
90% 228 260 44
70% 228 260 56
50% 293 372 37
40% 293 372 50
30% 293 374 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 230 265 18
95% 236 271 33
90% 236 271 35
70% 236 271 47
50% 236 271 87
40% 236 271 112
30% 262 318 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 264 19
95% 229 265 37
90% 229 265 39
70% 229 265 49
50% 256 313 56
40% 256 314 72
30% 256 314 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 17008
95% 3 4 14867
90% 229 264 40
70% 229 264 50
50% 295 374 35
40% 296 376 47
30% 305 413 52
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 113 134
95% 227 260 44
90% 227 260 47
70% 227 260 58
50% 291 368 41
40% 291 368 56
30% 299 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.