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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH TETRACYCLINE
Sequence Clustering and Redundancy Reduction Results
1I97
Sequence Clusters for the Sequence Entities in PDB 1I97
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 218 36
95% 194 219 50
90% 194 219 54
70% 194 219 65
50% 233 306 31
40% 233 306 42
30% 253 359 42
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 220 34
95% 194 220 46
90% 194 220 50
70% 194 220 60
50% 227 300 42
40% 249 360 31
30% 249 361 41
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 183 46
95% 194 227 27
90% 194 227 32
70% 227 311 21
50% 227 312 30
40% 227 312 41
30% 227 312 56
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 221 32
95% 194 221 44
90% 194 221 48
70% 194 221 58
50% 230 305 38
40% 230 305 50
30% 250 360 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 219 35
95% 194 219 51
90% 194 219 55
70% 194 220 63
50% 194 220 92
40% 194 220 113
30% 194 220 126
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 223 28
95% 199 228 25
90% 199 228 29
70% 199 228 41
50% 235 313 28
40% 235 314 39
30% 235 314 55
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 215 37
95% 194 220 48
90% 194 220 52
70% 194 220 62
50% 194 220 91
40% 194 221 112
30% 230 303 69
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18921
95% 3 4 16307
90% 193 218 57
70% 193 218 67
50% 193 218 94
40% 193 218 116
30% 193 218 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 49 517
95% 176 194 64
90% 176 194 66
70% 176 194 78
50% 176 194 111
40% 176 194 129
30% 176 194 148
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 223 27
95% 196 223 40
90% 196 223 45
70% 196 223 55
50% 229 303 35
40% 229 303 47
30% 229 303 65
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 220 30
95% 194 221 41
90% 194 221 46
70% 194 221 56
50% 227 299 41
40% 227 300 51
30% 227 300 68
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 170 49
95% 194 219 49
90% 194 219 53
70% 194 219 64
50% 194 219 93
40% 194 219 114
30% 194 219 127
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 210 39
95% 191 210 59
90% 191 210 62
70% 191 210 72
50% 191 210 98
40% 191 210 120
30% 191 210 133
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 193 45
95% 175 193 65
90% 175 193 67
70% 175 193 79
50% 193 236 78
40% 193 236 99
30% 193 236 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 213 38
95% 195 221 42
90% 195 221 47
70% 195 221 57
50% 228 300 39
40% 228 301 49
30% 228 301 67
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 220 33
95% 195 220 45
90% 195 220 49
70% 195 220 59
50% 229 304 34
40% 229 304 46
30% 229 306 64
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 225 24
95% 203 231 23
90% 203 231 28
70% 203 231 39
50% 203 231 82
40% 203 231 104
30% 220 270 77
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 224 26
95% 196 225 38
90% 196 225 42
70% 196 225 52
50% 217 268 50
40% 217 269 60
30% 217 269 80
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18206
95% 3 4 15788
90% 196 224 43
70% 196 224 53
50% 231 306 33
40% 232 308 43
30% 253 364 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 71 90 166
95% 194 220 47
90% 194 220 51
70% 194 220 61
50% 227 300 43
40% 227 300 52
30% 247 355 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.