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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Sequence Clustering and Redundancy Reduction Results
1I96
Sequence Clusters for the Sequence Entities in PDB 1I96
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 196 28
95% 156 197 44
90% 156 197 46
70% 156 197 58
50% 187 280 35
40% 187 280 45
30% 207 331 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 198 24
95% 156 198 40
90% 156 198 42
70% 156 198 54
50% 181 274 42
40% 203 330 35
30% 203 330 47
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 165 35
95% 156 205 31
90% 156 205 33
70% 181 286 24
50% 181 286 34
40% 181 286 44
30% 181 286 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 199 21
95% 156 199 37
90% 156 199 39
70% 156 199 51
50% 184 279 39
40% 184 279 51
30% 204 331 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 197 25
95% 156 197 45
90% 156 197 47
70% 156 197 59
50% 156 197 92
40% 156 197 114
30% 156 197 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 201 19
95% 160 206 30
90% 160 206 32
70% 160 206 43
50% 188 287 33
40% 188 287 43
30% 188 287 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 193 29
95% 156 198 42
90% 156 198 44
70% 156 198 56
50% 156 198 90
40% 156 198 112
30% 184 277 75
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18509
95% 2 4 15975
90% 156 196 48
70% 156 196 60
50% 156 196 93
40% 156 196 116
30% 156 196 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 49 505
95% 143 174 71
90% 143 174 75
70% 143 174 88
50% 143 174 128
40% 143 174 146
30% 143 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 176 45
95% 143 176 67
90% 143 176 70
70% 143 176 83
50% 182 277 38
40% 182 277 48
30% 182 277 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 198 22
95% 156 199 34
90% 156 199 37
70% 156 199 48
50% 156 199 88
40% 181 274 53
30% 181 274 74
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 129 148 54
95% 156 197 43
90% 156 197 45
70% 156 197 57
50% 156 197 91
40% 156 197 113
30% 156 197 136
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 188 31
95% 156 188 51
90% 156 188 54
70% 156 188 66
50% 156 188 111
40% 156 188 133
30% 156 188 153
Entity #22: Chains: V - TRANSLATION INITIATION FACTOR IF3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56427
95% 1 1 39162
90% 1 1 37440
70% 1 1 33325
50% 1 1 28694
40% 1 1 25381
30% 1 1 21460
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 173 48
95% 143 173 72
90% 143 173 76
70% 143 173 90
50% 153 213 75
40% 153 213 102
30% 153 213 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 191 30
95% 156 199 35
90% 156 199 38
70% 156 199 49
50% 181 274 40
40% 181 275 52
30% 181 275 73
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 198 23
95% 156 198 39
90% 156 198 41
70% 156 198 53
50% 182 278 37
40% 182 278 47
30% 182 280 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 203 17
95% 164 209 29
90% 164 209 31
70% 164 209 42
50% 164 209 80
40% 164 209 106
30% 181 247 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 202 18
95% 157 203 32
90% 157 203 34
70% 157 203 45
50% 178 245 53
40% 178 246 70
30% 178 246 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17811
95% 2 4 15474
90% 157 202 35
70% 157 202 46
50% 184 280 36
40% 185 282 46
30% 206 335 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 90 156
95% 156 198 41
90% 156 198 43
70% 156 198 55
50% 181 274 41
40% 181 274 54
30% 201 326 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.