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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Sequence Clustering and Redundancy Reduction Results
1I96
Sequence Clusters for the Sequence Entities in PDB 1I96
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 197 29
95% 157 198 45
90% 157 198 47
70% 157 198 59
50% 188 282 35
40% 188 282 45
30% 208 333 45
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 199 25
95% 157 199 40
90% 157 199 42
70% 157 199 54
50% 182 276 42
40% 204 332 35
30% 204 332 46
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 166 36
95% 157 206 31
90% 157 206 33
70% 182 288 24
50% 182 288 34
40% 182 288 44
30% 182 288 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 200 22
95% 157 200 38
90% 157 200 40
70% 157 200 51
50% 185 281 39
40% 185 281 50
30% 205 333 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 198 26
95% 157 198 46
90% 157 198 48
70% 157 198 60
50% 157 198 92
40% 157 198 114
30% 157 198 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 202 20
95% 161 207 30
90% 161 207 32
70% 161 207 43
50% 189 289 33
40% 189 289 43
30% 189 289 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 194 30
95% 157 199 42
90% 157 199 44
70% 157 199 56
50% 157 199 89
40% 157 199 112
30% 185 279 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18583
95% 2 4 16035
90% 157 197 49
70% 157 197 61
50% 157 197 93
40% 157 197 116
30% 157 197 138
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 49 507
95% 143 174 71
90% 143 174 75
70% 143 174 88
50% 143 174 128
40% 143 174 146
30% 143 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 202 19
95% 158 202 33
90% 158 202 36
70% 158 202 47
50% 183 279 38
40% 183 279 49
30% 183 279 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 199 23
95% 157 200 35
90% 157 200 38
70% 157 200 48
50% 157 200 88
40% 182 276 53
30% 182 276 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 130 149 54
95% 157 198 44
90% 157 198 46
70% 157 198 58
50% 157 198 91
40% 157 198 113
30% 157 198 136
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 189 32
95% 157 189 52
90% 157 189 55
70% 157 189 67
50% 157 189 111
40% 157 189 134
30% 157 189 153
Entity #22: Chains: V - TRANSLATION INITIATION FACTOR IF3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 56701
95% 1 1 39373
90% 1 1 37631
70% 1 1 33474
50% 1 1 28823
40% 1 1 25497
30% 1 1 21560
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 143 173 48
95% 143 173 72
90% 143 173 76
70% 143 173 90
50% 153 214 76
40% 153 214 102
30% 153 214 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 192 31
95% 157 200 36
90% 157 200 39
70% 157 200 49
50% 182 276 40
40% 182 277 51
30% 182 277 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 157 199 24
95% 157 199 39
90% 157 199 41
70% 157 199 52
50% 183 280 37
40% 183 280 48
30% 183 282 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 159 204 17
95% 165 210 29
90% 165 210 31
70% 165 210 42
50% 165 210 82
40% 165 210 107
30% 182 248 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 158 203 18
95% 158 204 32
90% 158 204 34
70% 158 204 44
50% 179 246 53
40% 179 247 70
30% 179 247 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17884
95% 2 4 15533
90% 158 203 35
70% 158 203 45
50% 185 282 36
40% 186 284 46
30% 207 337 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 90 158
95% 157 199 41
90% 157 199 43
70% 157 199 55
50% 182 276 41
40% 182 276 54
30% 202 328 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.