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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Sequence Clustering and Redundancy Reduction Results
1I96
Sequence Clusters for the Sequence Entities in PDB 1I96
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 217 36
95% 177 218 51
90% 177 218 55
70% 177 218 66
50% 209 306 31
40% 209 306 42
30% 229 368 40
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 219 34
95% 177 219 47
90% 177 219 51
70% 177 219 61
50% 203 300 42
40% 225 369 30
30% 225 370 38
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 182 46
95% 177 226 39
90% 177 226 43
70% 203 311 22
50% 203 312 30
40% 203 312 41
30% 203 312 57
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 220 32
95% 177 220 45
90% 177 220 49
70% 177 220 59
50% 206 305 39
40% 206 305 50
30% 226 369 44
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 218 35
95% 177 218 52
90% 177 218 56
70% 177 219 64
50% 177 219 92
40% 177 219 114
30% 177 219 128
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 222 29
95% 181 227 36
90% 181 227 40
70% 181 227 52
50% 210 313 29
40% 210 314 39
30% 210 314 54
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 214 37
95% 177 219 49
90% 177 219 53
70% 177 219 63
50% 177 219 91
40% 177 220 113
30% 206 303 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 19327
95% 2 4 16680
90% 177 217 58
70% 177 217 69
50% 177 217 94
40% 177 217 116
30% 177 217 130
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 49 532
95% 163 194 64
90% 163 194 67
70% 163 194 79
50% 163 194 113
40% 163 194 131
30% 163 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 222 28
95% 178 222 41
90% 178 222 46
70% 178 222 56
50% 204 303 38
40% 204 303 48
30% 204 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 219 30
95% 177 220 42
90% 177 220 47
70% 177 220 57
50% 203 299 41
40% 203 300 51
30% 203 300 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 169 49
95% 177 218 50
90% 177 218 54
70% 177 218 65
50% 177 218 93
40% 177 218 115
30% 177 218 129
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 209 40
95% 177 209 59
90% 177 209 62
70% 177 209 73
50% 177 209 100
40% 177 209 123
30% 177 209 135
Entity #22: Chains: V - TRANSLATION INITIATION FACTOR IF3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 58565
95% 1 1 40621
90% 1 1 38781
70% 1 1 34428
50% 1 1 29597
40% 1 1 26178
30% 1 1 22118
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 193 45
95% 163 193 65
90% 163 193 68
70% 163 193 80
50% 174 237 77
40% 174 237 102
30% 174 237 121
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 212 38
95% 177 220 43
90% 177 220 48
70% 177 220 58
50% 203 300 40
40% 203 301 49
30% 203 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 219 33
95% 177 219 46
90% 177 219 50
70% 177 219 60
50% 204 304 37
40% 204 304 47
30% 204 306 63
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 224 25
95% 185 230 24
90% 185 230 29
70% 185 230 41
50% 185 230 83
40% 185 230 108
30% 202 269 80
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 223 27
95% 178 224 40
90% 178 224 44
70% 178 224 54
50% 199 267 51
40% 199 268 64
30% 199 268 83
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18603
95% 2 4 16157
90% 178 223 45
70% 178 223 55
50% 206 306 35
40% 207 308 43
30% 228 373 37
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 59 89 181
95% 177 219 48
90% 177 219 52
70% 177 219 62
50% 203 300 43
40% 203 300 52
30% 223 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.