POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Sequence Clustering and Redundancy Reduction Results
1I96
Sequence Clusters for the Sequence Entities in PDB 1I96
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 204 25
95% 164 205 45
90% 164 205 47
70% 164 205 57
50% 195 290 35
40% 195 290 45
30% 215 342 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 206 23
95% 164 206 41
90% 164 206 43
70% 164 206 52
50% 189 284 41
40% 211 343 34
30% 211 344 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 124 172 33
95% 164 213 31
90% 164 213 34
70% 189 295 24
50% 189 296 34
40% 189 296 44
30% 189 296 67
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 207 20
95% 164 207 39
90% 164 207 41
70% 164 207 50
50% 192 289 39
40% 192 289 49
30% 212 343 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 205 24
95% 164 205 46
90% 164 205 48
70% 164 206 55
50% 164 206 85
40% 164 206 110
30% 164 206 129
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 209 18
95% 168 214 29
90% 168 214 32
70% 168 214 42
50% 196 297 33
40% 196 298 43
30% 196 298 65
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 201 29
95% 164 206 43
90% 164 206 45
70% 164 206 54
50% 164 206 84
40% 164 207 109
30% 192 287 74
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18721
95% 2 4 16155
90% 164 204 49
70% 164 204 58
50% 164 204 87
40% 164 204 112
30% 164 204 131
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 49 515
95% 149 180 55
90% 149 180 57
70% 149 180 72
50% 149 180 119
40% 149 180 143
30% 149 180 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 209 17
95% 165 209 33
90% 165 209 37
70% 165 209 46
50% 190 287 38
40% 190 287 48
30% 190 287 71
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 206 21
95% 164 207 35
90% 164 207 38
70% 164 207 47
50% 189 283 43
40% 189 284 51
30% 189 284 73
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 156 52
95% 164 205 44
90% 164 205 46
70% 164 205 56
50% 164 205 86
40% 164 205 111
30% 164 205 130
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 196 32
95% 164 196 51
90% 164 196 53
70% 164 196 64
50% 164 196 97
40% 164 196 120
30% 164 196 143
Entity #22: Chains: V - TRANSLATION INITIATION FACTOR IF3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57146
95% 1 1 39689
90% 1 1 37915
70% 1 1 33695
50% 1 1 28994
40% 1 1 25640
30% 1 1 21672
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 179 36
95% 149 179 56
90% 149 179 59
70% 149 179 73
50% 159 220 77
40% 159 220 100
30% 159 220 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 199 30
95% 164 207 37
90% 164 207 40
70% 164 207 49
50% 189 284 40
40% 189 285 50
30% 189 285 72
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 206 22
95% 164 206 40
90% 164 206 42
70% 164 206 51
50% 190 288 37
40% 190 288 47
30% 190 290 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 166 211 15
95% 172 217 28
90% 172 217 31
70% 172 217 41
50% 172 217 78
40% 172 217 102
30% 189 256 85
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 210 16
95% 165 211 32
90% 165 211 35
70% 165 211 44
50% 186 254 51
40% 186 255 67
30% 186 255 88
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18014
95% 2 4 15643
90% 165 210 36
70% 165 210 45
50% 192 290 36
40% 193 292 46
30% 214 347 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 90 160
95% 164 206 42
90% 164 206 44
70% 164 206 53
50% 189 284 42
40% 189 284 52
30% 209 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.