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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Sequence Clustering and Redundancy Reduction Results
1I96
Sequence Clusters for the Sequence Entities in PDB 1I96
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 209 265 27
95% 211 267 47
90% 211 267 49
70% 211 267 59
50% 265 382 34
40% 265 382 45
30% 265 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 268 25
95% 211 268 43
90% 211 268 45
70% 211 268 55
50% 259 376 41
40% 289 436 38
30% 289 436 51
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 237 35
95% 211 275 35
90% 211 275 37
70% 259 388 24
50% 259 388 33
40% 259 388 44
30% 259 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 269 22
95% 211 269 41
90% 211 269 43
70% 211 269 53
50% 259 378 38
40% 259 378 51
30% 287 434 54
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 267 26
95% 211 267 48
90% 211 267 50
70% 211 267 60
50% 211 267 93
40% 211 267 119
30% 211 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 271 20
95% 215 276 32
90% 215 276 34
70% 215 276 47
50% 266 389 32
40% 266 389 43
30% 266 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 263 28
95% 211 268 45
90% 211 268 47
70% 211 268 57
50% 211 268 91
40% 211 268 117
30% 259 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17804
95% 2 4 15438
90% 211 266 51
70% 211 266 61
50% 211 266 94
40% 211 266 120
30% 211 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 49 466
95% 195 232 61
90% 195 232 64
70% 195 232 78
50% 195 232 113
40% 195 232 138
30% 195 232 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 234 37
95% 195 234 59
90% 195 234 63
70% 195 234 77
50% 260 379 37
40% 260 379 49
30% 260 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 268 23
95% 211 269 38
90% 211 269 41
70% 211 269 51
50% 211 269 90
40% 259 376 53
30% 259 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 206 42
95% 211 267 46
90% 211 267 48
70% 211 267 58
50% 211 267 92
40% 211 267 118
30% 211 267 139
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 249 33
95% 211 249 52
90% 211 249 55
70% 211 249 66
50% 211 249 103
40% 211 249 130
30% 211 249 150
Entity #22: Chains: V - TRANSLATION INITIATION FACTOR IF3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54454
95% 1 1 37890
90% 1 1 36251
70% 1 1 32313
50% 1 1 27856
40% 1 1 24640
30% 1 1 20835
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 230 38
95% 194 230 62
90% 194 230 65
70% 194 230 79
50% 218 293 73
40% 218 293 98
30% 218 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 209 261 29
95% 211 269 39
90% 211 269 42
70% 211 269 52
50% 259 376 39
40% 259 377 52
30% 259 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 211 268 24
95% 211 268 42
90% 211 268 44
70% 211 268 54
50% 260 380 36
40% 260 380 48
30% 260 382 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 273 18
95% 219 279 29
90% 219 279 30
70% 219 279 44
50% 219 279 82
40% 219 279 106
30% 245 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 212 272 19
95% 212 273 36
90% 212 273 38
70% 212 273 49
50% 239 321 56
40% 239 322 73
30% 239 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17115
95% 2 4 14951
90% 212 272 39
70% 212 272 50
50% 262 382 35
40% 263 384 46
30% 292 441 47
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 113 138
95% 211 268 44
90% 211 268 46
70% 211 268 56
50% 259 376 40
40% 259 376 54
30% 287 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.