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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Sequence Clustering and Redundancy Reduction Results
1I96
Sequence Clusters for the Sequence Entities in PDB 1I96
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 218 36
95% 178 219 50
90% 178 219 54
70% 178 219 65
50% 209 306 31
40% 209 306 42
30% 229 359 42
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 220 34
95% 178 220 46
90% 178 220 50
70% 178 220 60
50% 203 300 42
40% 225 360 31
30% 225 361 41
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 183 46
95% 178 227 27
90% 178 227 32
70% 203 311 21
50% 203 312 30
40% 203 312 41
30% 203 312 56
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 221 32
95% 178 221 44
90% 178 221 48
70% 178 221 58
50% 206 305 38
40% 206 305 50
30% 226 360 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 219 35
95% 178 219 51
90% 178 219 55
70% 178 220 63
50% 178 220 92
40% 178 220 113
30% 178 220 126
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 223 28
95% 182 228 25
90% 182 228 29
70% 182 228 41
50% 210 313 28
40% 210 314 39
30% 210 314 55
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 215 37
95% 178 220 48
90% 178 220 52
70% 178 220 62
50% 178 220 91
40% 178 221 112
30% 206 303 69
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18921
95% 2 4 16307
90% 178 218 57
70% 178 218 67
50% 178 218 94
40% 178 218 116
30% 178 218 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 49 517
95% 163 194 64
90% 163 194 66
70% 163 194 78
50% 163 194 111
40% 163 194 129
30% 163 194 148
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 223 27
95% 179 223 40
90% 179 223 45
70% 179 223 55
50% 204 303 35
40% 204 303 47
30% 204 303 65
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 220 30
95% 178 221 41
90% 178 221 46
70% 178 221 56
50% 203 299 41
40% 203 300 51
30% 203 300 68
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 170 49
95% 178 219 49
90% 178 219 53
70% 178 219 64
50% 178 219 93
40% 178 219 114
30% 178 219 127
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 210 39
95% 178 210 59
90% 178 210 62
70% 178 210 72
50% 178 210 98
40% 178 210 120
30% 178 210 133
Entity #22: Chains: V - TRANSLATION INITIATION FACTOR IF3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57677
95% 1 1 40031
90% 1 1 38242
70% 1 1 33970
50% 1 1 29221
40% 1 1 25848
30% 1 1 21849
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 193 45
95% 163 193 65
90% 163 193 67
70% 163 193 79
50% 173 236 78
40% 173 236 99
30% 173 236 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 213 38
95% 178 221 42
90% 178 221 47
70% 178 221 57
50% 203 300 39
40% 203 301 49
30% 203 301 67
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 220 33
95% 178 220 45
90% 178 220 49
70% 178 220 59
50% 204 304 34
40% 204 304 46
30% 204 306 64
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 225 24
95% 186 231 23
90% 186 231 28
70% 186 231 39
50% 186 231 82
40% 186 231 104
30% 203 270 77
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 179 224 26
95% 179 225 38
90% 179 225 42
70% 179 225 52
50% 200 268 50
40% 200 269 60
30% 200 269 80
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18206
95% 2 4 15788
90% 179 224 43
70% 179 224 53
50% 206 306 33
40% 207 308 43
30% 228 364 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 90 166
95% 178 220 47
90% 178 220 51
70% 178 220 61
50% 203 300 43
40% 203 300 52
30% 223 355 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.