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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Sequence Clustering and Redundancy Reduction Results
1I96
Sequence Clusters for the Sequence Entities in PDB 1I96
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 252 29
95% 200 254 48
90% 200 254 51
70% 200 254 63
50% 254 369 35
40% 254 369 48
30% 254 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 255 27
95% 200 255 44
90% 200 255 47
70% 200 255 59
50% 248 363 42
40% 258 403 39
30% 258 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 224 37
95% 200 262 36
90% 200 262 38
70% 248 375 25
50% 248 375 34
40% 248 375 47
30% 248 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 256 24
95% 200 256 42
90% 200 256 45
70% 200 256 57
50% 248 365 39
40% 248 365 54
30% 256 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 254 28
95% 200 254 49
90% 200 254 52
70% 200 254 64
50% 200 254 99
40% 200 254 124
30% 200 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 258 22
95% 204 263 35
90% 204 263 37
70% 204 263 48
50% 255 376 32
40% 255 376 45
30% 255 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 250 31
95% 200 255 46
90% 200 255 49
70% 200 255 61
50% 200 255 97
40% 200 255 122
30% 248 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17661
95% 2 4 15325
90% 200 253 53
70% 200 253 65
50% 200 253 100
40% 200 253 126
30% 200 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 49 463
95% 184 221 64
90% 184 221 68
70% 184 221 81
50% 184 221 116
40% 184 221 144
30% 184 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 184 223 38
95% 184 223 63
90% 184 223 67
70% 184 223 80
50% 249 366 38
40% 249 366 53
30% 249 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 255 25
95% 200 256 39
90% 200 256 43
70% 200 256 55
50% 200 256 96
40% 248 363 56
30% 248 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 193 43
95% 200 254 47
90% 200 254 50
70% 200 254 62
50% 200 254 98
40% 200 254 123
30% 200 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 238 34
95% 200 238 55
90% 200 238 59
70% 200 238 71
50% 200 238 110
40% 200 238 133
30% 200 238 153
Entity #22: Chains: V - TRANSLATION INITIATION FACTOR IF3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 54017
95% 1 1 37560
90% 1 1 35938
70% 1 1 32073
50% 1 1 27656
40% 1 1 24463
30% 1 1 20690
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 183 219 39
95% 183 219 66
90% 183 219 70
70% 183 219 83
50% 207 282 81
40% 207 282 102
30% 207 282 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 248 32
95% 200 256 40
90% 200 256 44
70% 200 256 56
50% 248 363 40
40% 248 364 55
30% 248 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 255 26
95% 200 255 43
90% 200 255 46
70% 200 255 58
50% 249 367 37
40% 249 367 52
30% 249 369 73
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 260 18
95% 208 266 34
90% 208 266 36
70% 208 266 47
50% 208 266 88
40% 208 266 112
30% 234 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 201 259 20
95% 201 260 37
90% 201 260 39
70% 201 260 51
50% 228 308 57
40% 228 309 74
30% 228 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 16976
95% 2 4 14842
90% 201 259 40
70% 201 259 52
50% 251 369 36
40% 252 371 49
30% 261 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 113 134
95% 200 255 45
90% 200 255 48
70% 200 255 60
50% 248 363 41
40% 248 363 57
30% 256 399 60
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.