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An Information Portal to 105097 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH THE TRANSLATION INITIATION FACTOR IF3 (C-TERMINAL DOMAIN)
Sequence Clustering and Redundancy Reduction Results
1I96
Sequence Clusters for the Sequence Entities in PDB 1I96
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 187 27
95% 148 188 47
90% 148 188 50
70% 148 188 60
50% 178 269 34
40% 178 269 46
30% 178 274 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 189 25
95% 148 189 43
90% 148 189 46
70% 148 189 56
50% 172 263 41
40% 194 316 35
30% 194 316 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 158 35
95% 148 196 35
90% 148 196 37
70% 172 275 24
50% 172 275 33
40% 172 275 45
30% 172 275 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 190 22
95% 148 190 41
90% 148 190 44
70% 148 190 54
50% 175 268 38
40% 175 268 51
30% 195 317 50
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 188 26
95% 148 188 48
90% 148 188 51
70% 148 188 61
50% 148 188 94
40% 148 188 119
30% 148 188 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 192 20
95% 152 197 33
90% 152 197 35
70% 152 197 47
50% 179 276 32
40% 179 276 43
30% 179 276 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 184 28
95% 148 189 45
90% 148 189 48
70% 148 189 58
50% 148 189 92
40% 148 189 117
30% 175 266 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 18053
95% 2 4 15631
90% 148 187 52
70% 148 187 62
50% 148 187 95
40% 148 187 120
30% 148 187 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 30 49 492
95% 137 168 61
90% 137 168 64
70% 137 168 80
50% 137 168 117
40% 137 168 139
30% 137 168 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 170 37
95% 137 170 59
90% 137 170 63
70% 137 170 78
50% 173 266 37
40% 173 266 49
30% 173 266 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 189 23
95% 148 190 38
90% 148 190 42
70% 148 190 52
50% 148 190 91
40% 172 263 53
30% 172 263 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 121 140 42
95% 148 188 46
90% 148 188 49
70% 148 188 59
50% 148 188 93
40% 148 188 118
30% 148 188 141
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 179 34
95% 148 179 53
90% 148 179 55
70% 148 179 68
50% 148 179 105
40% 148 179 132
30% 148 179 151
Entity #22: Chains: V - TRANSLATION INITIATION FACTOR IF3 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 55188
95% 1 1 38391
90% 1 1 36705
70% 1 1 32688
50% 1 1 28169
40% 1 1 24922
30% 1 1 21085
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 136 166 38
95% 136 166 63
90% 136 166 66
70% 136 166 82
50% 147 206 75
40% 147 206 100
30% 147 206 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 146 182 29
95% 148 190 39
90% 148 190 43
70% 148 190 53
50% 172 263 39
40% 172 264 52
30% 172 264 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 148 189 24
95% 148 189 42
90% 148 189 45
70% 148 189 55
50% 173 267 36
40% 173 267 48
30% 173 269 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 150 194 18
95% 156 200 29
90% 156 200 30
70% 156 200 44
50% 156 200 86
40% 156 200 108
30% 171 236 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 193 19
95% 149 194 36
90% 149 194 38
70% 149 194 49
50% 168 234 56
40% 168 235 74
30% 168 235 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 4 17360
95% 2 4 15139
90% 149 193 39
70% 149 193 51
50% 175 269 35
40% 176 271 47
30% 197 321 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 58 87 155
95% 148 189 44
90% 148 189 47
70% 148 189 57
50% 172 263 40
40% 172 263 54
30% 192 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.