Sequence Similarity Clusters for the Entities in PDB 1I96

Entity #1 | Chains: A
16S RRNA rna, length: 1514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 231 290 34
95 % 232 291 49 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 232 291 54
70 % 232 291 65
50 % 271 455 25
40 % 271 455 40
30 % 308 572 34
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 292 32
95 % 232 292 45 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 232 292 50
70 % 232 292 60
50 % 265 449 33
40 % 304 584 19
30 % 304 584 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 157 220 54
95 % 232 299 37 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 232 299 41
70 % 265 453 17
50 % 265 466 24
40 % 265 466 38
30 % 265 466 57
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 293 30
95 % 232 293 43 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 232 293 47
70 % 232 293 58
50 % 268 453 32
40 % 268 453 46
30 % 305 573 37
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 232 291 33
95 % 232 291 50
90 % 232 291 55
70 % 232 304 49
50 % 232 304 89
40 % 232 304 110
30 % 232 304 122
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 295 27
95 % 236 300 36 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 236 300 40
70 % 236 300 50
50 % 272 461 26
40 % 272 466 37
30 % 272 466 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 287 35
95 % 232 292 47 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 232 292 52
70 % 232 292 62
50 % 232 302 90
40 % 232 308 107
30 % 268 451 64
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 24769
95 % 2 4 21106 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 231 289 56
70 % 231 289 66
50 % 231 289 94
40 % 231 289 117
30 % 231 289 127
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 51 753
95 % 202 246 65 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 0.8
PDBFlex
90 % 202 246 68
70 % 202 246 84
50 % 202 246 113
40 % 202 246 138
30 % 202 246 143
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 295 26
95 % 233 295 39 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 233 295 44
70 % 233 295 54
50 % 266 455 28
40 % 266 458 42
30 % 266 458 58
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 292 28
95 % 232 293 40 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 232 293 45
70 % 232 293 55
50 % 265 441 35
40 % 265 447 47
30 % 265 447 63
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 203 238 47
95 % 232 291 48
90 % 232 291 53
70 % 232 291 64
50 % 232 291 93
40 % 232 291 116
30 % 232 291 126
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 282 41
95 % 232 282 55 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 232 282 61
70 % 232 282 71
50 % 232 282 98
40 % 232 282 121
30 % 232 282 129
Entity #22 | Chains: V
TRANSLATION INITIATION FACTOR IF3 protein, length: 89 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72812
95 % 1 1 50274
90 % 1 1 47628
70 % 1 1 41710
50 % 1 1 35541
40 % 1 1 31318
30 % 1 1 26414
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 202 245 46
95 % 202 245 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 202 245 69
70 % 202 245 85
50 % 213 320 86
40 % 213 320 104
30 % 213 320 116
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 230 285 38
95 % 232 293 41 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 232 293 46
70 % 232 293 57
50 % 265 449 29
40 % 265 455 43
30 % 265 455 59
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 292 31
95 % 232 292 44 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 232 292 49
70 % 232 292 59
50 % 266 450 31
40 % 266 450 45
30 % 266 452 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 234 297 24
95 % 240 303 35 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.8
PDBFlex
90 % 240 303 39
70 % 240 303 48
50 % 240 303 88
40 % 240 303 109
30 % 264 386 88
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 296 25
95 % 233 297 38 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.8
PDBFlex
90 % 233 297 42
70 % 233 297 51
50 % 261 388 60
40 % 261 394 71
30 % 261 394 87
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 23898
95 % 2 4 20473 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 233 296 43
70 % 233 296 52
50 % 268 454 27
40 % 269 461 39
30 % 308 589 32
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 94 223
95 % 232 292 46 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 232 292 51
70 % 232 292 61
50 % 265 443 34
40 % 265 444 48
30 % 302 573 36

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures