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An Information Portal to 111558 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 217 36
95% 195 218 51
90% 195 218 55
70% 195 218 67
50% 236 306 31
40% 236 306 42
30% 256 368 40
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 219 34
95% 195 219 47
90% 195 219 51
70% 195 219 62
50% 230 300 42
40% 252 369 30
30% 252 370 38
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 182 46
95% 195 226 39
90% 195 226 43
70% 230 311 22
50% 230 312 30
40% 230 312 41
30% 230 312 57
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 220 32
95% 195 220 45
90% 195 220 49
70% 195 220 60
50% 233 305 39
40% 233 305 50
30% 253 369 44
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 218 35
95% 195 218 52
90% 195 218 56
70% 195 219 65
50% 195 219 92
40% 195 219 114
30% 195 219 128
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 222 29
95% 200 227 36
90% 200 227 40
70% 200 227 52
50% 238 313 29
40% 238 314 39
30% 238 314 54
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 214 37
95% 195 219 49
90% 195 219 53
70% 195 219 64
50% 195 219 91
40% 195 220 113
30% 233 303 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 19283
95% 4 4 16642
90% 194 217 58
70% 194 217 69
50% 194 217 94
40% 194 217 116
30% 194 217 130
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 530
95% 177 194 64
90% 177 194 66
70% 177 194 79
50% 177 194 113
40% 177 194 131
30% 177 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 222 28
95% 197 222 41
90% 197 222 46
70% 197 222 57
50% 232 303 38
40% 232 303 48
30% 232 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 219 30
95% 195 220 42
90% 195 220 47
70% 195 220 58
50% 230 299 41
40% 230 300 51
30% 230 300 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 160 169 49
95% 195 218 50
90% 195 218 54
70% 195 218 66
50% 195 218 93
40% 195 218 115
30% 195 218 129
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 191 209 40
95% 191 209 59
90% 191 209 62
70% 191 209 73
50% 191 209 100
40% 191 209 123
30% 191 209 135
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 193 45
95% 176 193 65
90% 176 193 67
70% 176 193 80
50% 196 237 77
40% 196 237 102
30% 196 237 121
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 212 38
95% 196 220 43
90% 196 220 48
70% 196 220 59
50% 231 300 40
40% 231 301 49
30% 231 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 219 33
95% 196 219 46
90% 196 219 50
70% 196 219 61
50% 232 304 37
40% 232 304 47
30% 232 306 63
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 224 25
95% 204 230 24
90% 204 230 29
70% 204 230 41
50% 204 230 83
40% 204 230 108
30% 221 269 80
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 223 27
95% 197 224 40
90% 197 224 44
70% 197 224 55
50% 218 267 51
40% 218 268 64
30% 218 268 83
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18560
95% 4 4 16120
90% 197 223 45
70% 197 223 56
50% 234 306 35
40% 235 308 43
30% 256 373 37
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 72 89 180
95% 195 219 48
90% 195 219 52
70% 195 219 63
50% 230 300 43
40% 230 300 52
30% 250 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.