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An Information Portal to 105097 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 187 27
95% 165 188 47
90% 165 188 50
70% 165 188 60
50% 204 269 34
40% 204 269 46
30% 204 274 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 189 25
95% 165 189 43
90% 165 189 46
70% 165 189 56
50% 198 263 41
40% 220 316 35
30% 220 316 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 158 35
95% 165 196 35
90% 165 196 37
70% 198 275 24
50% 198 275 33
40% 198 275 45
30% 198 275 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 190 22
95% 165 190 41
90% 165 190 44
70% 165 190 54
50% 201 268 38
40% 201 268 51
30% 221 317 50
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 188 26
95% 165 188 48
90% 165 188 51
70% 165 188 61
50% 165 188 94
40% 165 188 119
30% 165 188 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 192 20
95% 170 197 33
90% 170 197 35
70% 170 197 47
50% 206 276 32
40% 206 276 43
30% 206 276 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 184 28
95% 165 189 45
90% 165 189 48
70% 165 189 58
50% 165 189 92
40% 165 189 117
30% 201 266 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18053
95% 4 4 15631
90% 164 187 52
70% 164 187 62
50% 164 187 95
40% 164 187 120
30% 164 187 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 492
95% 151 168 61
90% 151 168 64
70% 151 168 80
50% 151 168 117
40% 151 168 139
30% 151 168 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 170 37
95% 151 170 59
90% 151 170 63
70% 151 170 78
50% 200 266 37
40% 200 266 49
30% 200 266 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 189 23
95% 165 190 38
90% 165 190 42
70% 165 190 52
50% 165 190 91
40% 198 263 53
30% 198 263 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 140 42
95% 165 188 46
90% 165 188 49
70% 165 188 59
50% 165 188 93
40% 165 188 118
30% 165 188 141
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 179 34
95% 161 179 53
90% 161 179 55
70% 161 179 68
50% 161 179 105
40% 161 179 132
30% 161 179 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 166 38
95% 149 166 63
90% 149 166 66
70% 149 166 82
50% 169 206 75
40% 169 206 100
30% 169 206 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 182 29
95% 166 190 39
90% 166 190 43
70% 166 190 53
50% 199 263 39
40% 199 264 52
30% 199 264 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 166 189 24
95% 166 189 42
90% 166 189 45
70% 166 189 55
50% 200 267 36
40% 200 267 48
30% 200 269 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 194 18
95% 174 200 29
90% 174 200 30
70% 174 200 44
50% 174 200 86
40% 174 200 108
30% 189 236 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 193 19
95% 167 194 36
90% 167 194 38
70% 167 194 49
50% 186 234 56
40% 186 235 74
30% 186 235 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17360
95% 4 4 15139
90% 167 193 39
70% 167 193 51
50% 202 269 35
40% 203 271 47
30% 224 321 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 87 155
95% 165 189 44
90% 165 189 47
70% 165 189 57
50% 198 263 40
40% 198 263 54
30% 218 312 53
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.