POP-OUT | CLOSE

An Information Portal to 108263 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 197 29
95% 175 198 45
90% 175 198 47
70% 175 198 59
50% 215 282 35
40% 215 282 45
30% 235 333 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 199 25
95% 175 199 40
90% 175 199 42
70% 175 199 54
50% 209 276 42
40% 231 333 35
30% 231 333 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 135 166 36
95% 175 206 31
90% 175 206 33
70% 209 288 24
50% 209 288 34
40% 209 288 44
30% 209 288 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 200 22
95% 175 200 38
90% 175 200 40
70% 175 200 51
50% 212 281 39
40% 212 281 50
30% 232 334 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 198 26
95% 175 198 46
90% 175 198 48
70% 175 198 60
50% 175 198 92
40% 175 198 114
30% 175 198 138
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 202 20
95% 180 207 30
90% 180 207 32
70% 180 207 43
50% 217 289 33
40% 217 289 43
30% 217 289 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 194 30
95% 175 199 42
90% 175 199 44
70% 175 199 56
50% 175 199 89
40% 175 199 112
30% 212 279 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18605
95% 4 4 16054
90% 174 197 49
70% 174 197 61
50% 174 197 93
40% 174 197 116
30% 174 197 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 508
95% 157 174 71
90% 157 174 75
70% 157 174 89
50% 157 174 130
40% 157 174 148
30% 157 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 202 19
95% 177 202 33
90% 177 202 36
70% 177 202 47
50% 211 279 38
40% 211 279 49
30% 211 279 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 199 23
95% 175 200 35
90% 175 200 38
70% 175 200 48
50% 175 200 88
40% 209 276 53
30% 209 276 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 140 149 54
95% 175 198 44
90% 175 198 46
70% 175 198 58
50% 175 198 91
40% 175 198 113
30% 175 198 137
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 189 32
95% 171 189 52
90% 171 189 55
70% 171 189 67
50% 171 189 112
40% 171 189 135
30% 171 189 153
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 156 173 48
95% 156 173 72
90% 156 173 76
70% 156 173 91
50% 175 214 76
40% 175 214 102
30% 175 214 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 192 31
95% 176 200 36
90% 176 200 39
70% 176 200 49
50% 210 276 40
40% 210 277 51
30% 210 277 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 199 24
95% 176 199 39
90% 176 199 41
70% 176 199 52
50% 211 280 37
40% 211 280 48
30% 211 282 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 204 17
95% 184 210 29
90% 184 210 31
70% 184 210 42
50% 184 210 82
40% 184 210 107
30% 201 248 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 177 203 18
95% 177 204 32
90% 177 204 34
70% 177 204 44
50% 198 246 54
40% 198 247 71
30% 198 247 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17903
95% 4 4 15549
90% 177 203 35
70% 177 203 45
50% 213 282 36
40% 214 284 46
30% 235 338 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 90 158
95% 175 199 41
90% 175 199 43
70% 175 199 55
50% 209 276 41
40% 209 276 54
30% 229 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.