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An Information Portal to 110790 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 218 36
95% 196 219 51
90% 196 219 55
70% 196 219 67
50% 236 306 33
40% 236 306 43
30% 256 360 42
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 220 34
95% 196 220 47
90% 196 220 51
70% 196 220 62
50% 230 300 42
40% 252 361 30
30% 252 362 41
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 183 46
95% 196 227 38
90% 196 227 42
70% 230 311 23
50% 230 312 32
40% 230 312 42
30% 230 312 57
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 221 32
95% 196 221 45
90% 196 221 49
70% 196 221 60
50% 233 305 38
40% 233 305 50
30% 253 361 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 219 35
95% 196 219 52
90% 196 219 56
70% 196 220 65
50% 196 220 92
40% 196 220 113
30% 196 220 126
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 223 29
95% 201 228 26
90% 201 228 31
70% 201 228 43
50% 238 313 29
40% 238 314 40
30% 238 314 55
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 215 37
95% 196 220 49
90% 196 220 53
70% 196 220 64
50% 196 220 91
40% 196 221 112
30% 233 303 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 19104
95% 4 4 16475
90% 195 218 58
70% 195 218 69
50% 195 218 94
40% 195 218 116
30% 195 218 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 525
95% 177 194 64
90% 177 194 66
70% 177 194 79
50% 177 194 111
40% 177 194 130
30% 177 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 223 27
95% 198 223 41
90% 198 223 46
70% 198 223 57
50% 232 303 37
40% 232 303 48
30% 232 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 196 220 30
95% 196 221 42
90% 196 221 47
70% 196 221 58
50% 230 299 41
40% 230 300 51
30% 230 300 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 170 49
95% 196 219 50
90% 196 219 54
70% 196 219 66
50% 196 219 93
40% 196 219 114
30% 196 219 127
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 192 210 40
95% 192 210 59
90% 192 210 62
70% 192 210 73
50% 192 210 98
40% 192 210 120
30% 192 210 133
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 176 193 45
95% 176 193 65
90% 176 193 67
70% 176 193 80
50% 195 236 78
40% 195 236 99
30% 195 236 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 194 213 38
95% 197 221 43
90% 197 221 48
70% 197 221 59
50% 231 300 39
40% 231 301 49
30% 231 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 197 220 33
95% 197 220 46
90% 197 220 50
70% 197 220 61
50% 232 304 36
40% 232 304 47
30% 232 306 65
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 199 225 24
95% 205 231 24
90% 205 231 29
70% 205 231 41
50% 205 231 83
40% 205 231 105
30% 222 270 79
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 198 224 26
95% 198 225 40
90% 198 225 44
70% 198 225 55
50% 219 268 51
40% 219 269 62
30% 219 269 81
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18383
95% 4 4 15955
90% 198 224 45
70% 198 224 56
50% 234 306 34
40% 235 308 44
30% 256 365 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 90 167
95% 196 220 48
90% 196 220 52
70% 196 220 63
50% 230 300 43
40% 230 300 52
30% 250 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.