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An Information Portal to 107049 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 194 28
95% 172 195 46
90% 172 195 48
70% 172 195 59
50% 211 276 35
40% 211 276 45
30% 231 327 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 196 26
95% 172 196 42
90% 172 196 44
70% 172 196 55
50% 205 270 42
40% 227 326 35
30% 227 326 47
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 134 165 35
95% 172 203 31
90% 172 203 33
70% 205 282 24
50% 205 282 34
40% 205 282 44
30% 205 282 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 197 23
95% 172 197 38
90% 172 197 40
70% 172 197 52
50% 208 275 39
40% 208 275 52
30% 228 327 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 195 27
95% 172 195 47
90% 172 195 49
70% 172 195 60
50% 172 195 93
40% 172 195 116
30% 172 195 139
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 199 19
95% 177 204 30
90% 177 204 32
70% 177 204 44
50% 213 283 33
40% 213 283 43
30% 213 283 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 191 29
95% 172 196 44
90% 172 196 46
70% 172 196 57
50% 172 196 90
40% 172 196 114
30% 208 273 77
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18419
95% 4 4 15911
90% 171 194 50
70% 171 194 61
50% 171 194 94
40% 171 194 117
30% 171 194 141
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 499
95% 155 172 70
90% 155 172 74
70% 155 172 88
50% 155 172 125
40% 155 172 146
30% 155 172 165
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 174 47
95% 155 174 69
90% 155 174 73
70% 155 174 87
50% 207 273 38
40% 207 273 50
30% 207 273 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 172 196 24
95% 172 197 35
90% 172 197 38
70% 172 197 50
50% 172 197 89
40% 205 270 54
30% 205 270 76
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 137 146 54
95% 172 195 45
90% 172 195 47
70% 172 195 58
50% 172 195 92
40% 172 195 115
30% 172 195 138
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 186 32
95% 168 186 51
90% 168 186 54
70% 168 186 66
50% 168 186 111
40% 168 186 134
30% 168 186 152
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 154 171 48
95% 154 171 73
90% 154 171 76
70% 154 171 90
50% 173 210 77
40% 173 210 101
30% 173 210 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 170 189 30
95% 173 197 36
90% 173 197 39
70% 173 197 51
50% 206 270 40
40% 206 271 53
30% 206 271 75
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 173 196 25
95% 173 196 40
90% 173 196 42
70% 173 196 54
50% 207 274 37
40% 207 274 49
30% 207 276 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 175 201 17
95% 181 207 29
90% 181 207 31
70% 181 207 42
50% 181 207 82
40% 181 207 108
30% 197 244 91
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 174 200 18
95% 174 201 33
90% 174 201 35
70% 174 201 46
50% 194 242 55
40% 194 243 71
30% 194 243 95
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17724
95% 4 4 15414
90% 174 200 36
70% 174 200 47
50% 209 276 36
40% 210 278 46
30% 231 331 45
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 90 140
95% 172 196 43
90% 172 196 45
70% 172 196 56
50% 205 270 41
40% 205 270 55
30% 225 322 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.