Sequence Similarity Clusters for the Entities in PDB 1I95

Entity #1 | Chains: A
16S RRNA rna, length: 1514 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 232 268 39
95 % 233 269 53 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 233 269 58
70 % 233 269 68
50 % 282 419 26
40 % 282 419 38
30 % 315 525 31
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 270 35
95 % 233 270 49 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 233 270 54
70 % 233 270 64
50 % 275 413 32
40 % 310 525 19
30 % 310 525 32
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 131 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 173 217 51
95 % 233 277 40 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 233 277 45
70 % 275 420 19
50 % 275 430 24
40 % 275 430 36
30 % 275 430 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 271 33
95 % 233 271 47 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 233 271 52
70 % 233 271 62
50 % 278 417 31
40 % 278 417 46
30 % 311 523 34
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 269 38
95 % 233 269 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 233 269 59
70 % 233 277 55
50 % 233 277 91
40 % 233 277 115
30 % 233 277 123
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 273 30
95 % 238 278 38 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.6
PDBFlex
90 % 238 278 43
70 % 238 278 53
50 % 283 426 25
40 % 283 431 35
30 % 283 431 54
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 265 41
95 % 233 270 51 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 233 270 56
70 % 233 270 66
50 % 233 277 90
40 % 233 277 114
30 % 278 412 63
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 23276
95 % 4 4 19876 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 232 268 60
70 % 232 268 69
50 % 232 268 94
40 % 232 268 118
30 % 232 268 128
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 37 51 715
95 % 207 235 65 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 207 235 70
70 % 207 235 82
50 % 207 235 111
40 % 207 235 135
30 % 207 235 143
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 235 273 29
95 % 235 273 42 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 235 273 48
70 % 235 273 59
50 % 277 419 28
40 % 277 422 40
30 % 277 422 56
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 255 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 233 270 31
95 % 233 271 44 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.5
PDBFlex
90 % 233 271 50
70 % 233 271 60
50 % 275 408 36
40 % 275 413 45
30 % 275 413 62
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 196 218 50
95 % 233 269 52 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 233 269 57
70 % 233 269 67
50 % 233 269 93
40 % 233 269 116
30 % 233 269 127
Entity #21 | Chains: U
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 229 260 43
95 % 229 260 59 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 229 260 63
70 % 229 260 74
50 % 229 260 98
40 % 229 260 121
30 % 229 260 133
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 234 48
95 % 206 234 66 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 206 234 71
70 % 206 234 83
50 % 226 308 84
40 % 226 308 103
30 % 226 308 116
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 231 263 42
95 % 234 271 45 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.6
PDBFlex
90 % 234 271 51
70 % 234 271 61
50 % 276 414 30
40 % 276 419 41
30 % 276 419 57
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 234 270 34
95 % 234 270 48 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 234 270 53
70 % 234 270 63
50 % 277 416 29
40 % 277 416 42
30 % 277 418 61
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 236 275 27
95 % 242 281 37 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 242 281 42
70 % 242 281 51
50 % 242 281 88
40 % 242 281 110
30 % 266 353 93
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 235 274 28
95 % 235 275 41 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 235 275 46
70 % 235 275 56
50 % 263 354 68
40 % 263 359 85
30 % 263 359 95
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 22430
95 % 4 4 19271 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 235 274 47
70 % 235 274 57
50 % 279 419 27
40 % 280 425 37
30 % 315 538 30
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 74 91 217
95 % 233 270 50 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 233 270 55
70 % 233 270 65
50 % 275 410 35
40 % 275 410 48
30 % 308 520 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.