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An Information Portal to 105212 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 265 27
95% 238 267 47
90% 238 267 49
70% 238 267 59
50% 312 384 34
40% 312 384 46
30% 312 389 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 268 25
95% 238 268 43
90% 238 268 45
70% 238 268 55
50% 306 378 41
40% 350 454 34
30% 350 454 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 200 237 35
95% 238 275 35
90% 238 275 37
70% 306 390 24
50% 306 390 33
40% 306 390 45
30% 306 390 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 269 22
95% 238 269 41
90% 238 269 43
70% 238 269 53
50% 306 380 38
40% 306 380 51
30% 348 452 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 267 26
95% 238 267 48
90% 238 267 50
70% 238 267 60
50% 238 267 94
40% 238 267 119
30% 238 267 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 271 20
95% 243 276 32
90% 243 276 34
70% 243 276 47
50% 314 391 32
40% 314 391 43
30% 314 391 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 263 28
95% 238 268 45
90% 238 268 47
70% 238 268 57
50% 238 268 92
40% 238 268 117
30% 306 378 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17934
95% 4 4 15546
90% 237 266 51
70% 237 266 61
50% 237 266 95
40% 237 266 120
30% 237 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 486
95% 215 232 61
90% 215 232 64
70% 215 232 78
50% 215 232 116
40% 215 232 139
30% 215 232 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 215 234 37
95% 215 234 59
90% 215 234 63
70% 215 234 77
50% 308 381 37
40% 308 381 49
30% 308 381 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 238 268 23
95% 238 269 38
90% 238 269 41
70% 238 269 51
50% 238 269 91
40% 306 378 53
30% 306 378 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 195 206 42
95% 238 267 46
90% 238 267 48
70% 238 267 58
50% 238 267 93
40% 238 267 118
30% 238 267 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 249 34
95% 231 249 53
90% 231 249 55
70% 231 249 68
50% 231 249 105
40% 231 249 132
30% 231 249 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 213 230 38
95% 213 230 63
90% 213 230 66
70% 213 230 80
50% 255 293 74
40% 255 293 99
30% 255 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 236 261 29
95% 239 269 39
90% 239 269 42
70% 239 269 52
50% 307 378 39
40% 307 379 52
30% 307 379 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 239 268 24
95% 239 268 42
90% 239 268 44
70% 239 268 54
50% 308 382 36
40% 308 382 48
30% 308 384 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 241 273 18
95% 247 279 29
90% 247 279 30
70% 247 279 44
50% 247 279 86
40% 247 279 108
30% 275 328 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 240 272 19
95% 240 273 36
90% 240 273 38
70% 240 273 49
50% 269 323 56
40% 269 324 74
30% 269 324 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17242
95% 4 4 15054
90% 240 272 39
70% 240 272 50
50% 310 384 35
40% 311 386 47
30% 354 459 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 113 155
95% 238 268 44
90% 238 268 46
70% 238 268 56
50% 306 378 40
40% 306 378 54
30% 348 450 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.