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An Information Portal to 105339 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 164 187 28
95% 165 188 47
90% 165 188 50
70% 165 188 60
50% 204 269 34
40% 204 269 45
30% 204 274 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 189 26
95% 165 189 43
90% 165 189 46
70% 165 189 56
50% 198 263 41
40% 220 316 35
30% 220 316 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 127 158 35
95% 165 196 35
90% 165 196 37
70% 198 275 24
50% 198 275 33
40% 198 275 44
30% 198 275 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 190 23
95% 165 190 41
90% 165 190 44
70% 165 190 54
50% 201 268 38
40% 201 268 51
30% 221 317 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 188 27
95% 165 188 48
90% 165 188 51
70% 165 188 61
50% 165 188 94
40% 165 188 119
30% 165 188 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 192 21
95% 170 197 33
90% 170 197 35
70% 170 197 47
50% 206 276 32
40% 206 276 43
30% 206 276 66
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 184 29
95% 165 189 45
90% 165 189 48
70% 165 189 58
50% 165 189 92
40% 165 189 117
30% 201 266 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18083
95% 4 4 15661
90% 164 187 52
70% 164 187 62
50% 164 187 95
40% 164 187 120
30% 164 187 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 491
95% 151 168 61
90% 151 168 64
70% 151 168 80
50% 151 168 117
40% 151 168 139
30% 151 168 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 151 170 37
95% 151 170 59
90% 151 170 63
70% 151 170 78
50% 200 266 37
40% 200 266 50
30% 200 266 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 165 189 24
95% 165 190 38
90% 165 190 42
70% 165 190 52
50% 165 190 91
40% 198 263 54
30% 198 263 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 131 140 42
95% 165 188 46
90% 165 188 49
70% 165 188 59
50% 165 188 93
40% 165 188 118
30% 165 188 141
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 161 179 34
95% 161 179 54
90% 161 179 56
70% 161 179 69
50% 161 179 105
40% 161 179 132
30% 161 179 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 149 166 38
95% 149 166 63
90% 149 166 66
70% 149 166 82
50% 168 205 77
40% 168 205 101
30% 168 205 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 163 182 31
95% 166 190 39
90% 166 190 43
70% 166 190 53
50% 199 263 39
40% 199 264 52
30% 199 264 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 166 189 25
95% 166 189 42
90% 166 189 45
70% 166 189 55
50% 200 267 36
40% 200 267 49
30% 200 269 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 194 19
95% 174 200 29
90% 174 200 30
70% 174 200 45
50% 174 200 86
40% 174 200 108
30% 190 237 93
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 167 193 20
95% 167 194 36
90% 167 194 38
70% 167 194 50
50% 187 235 56
40% 187 236 73
30% 187 236 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17390
95% 4 4 15169
90% 167 193 39
70% 167 193 51
50% 202 269 35
40% 203 271 46
30% 224 321 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 87 159
95% 165 189 44
90% 165 189 47
70% 165 189 57
50% 198 263 40
40% 198 263 55
30% 218 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.