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An Information Portal to 108957 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 181 204 25
95% 182 205 45
90% 182 205 47
70% 182 205 57
50% 222 290 35
40% 222 290 45
30% 242 342 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 206 23
95% 182 206 41
90% 182 206 43
70% 182 206 52
50% 216 284 41
40% 238 343 34
30% 238 344 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 141 172 33
95% 182 213 31
90% 182 213 34
70% 216 295 24
50% 216 296 34
40% 216 296 44
30% 216 296 67
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 207 20
95% 182 207 39
90% 182 207 41
70% 182 207 50
50% 219 289 39
40% 219 289 49
30% 239 343 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 205 24
95% 182 205 46
90% 182 205 48
70% 182 206 55
50% 182 206 85
40% 182 206 110
30% 182 206 129
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 209 18
95% 187 214 29
90% 187 214 32
70% 187 214 42
50% 224 297 33
40% 224 298 43
30% 224 298 65
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 201 29
95% 182 206 43
90% 182 206 45
70% 182 206 54
50% 182 206 84
40% 182 207 109
30% 219 287 74
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18721
95% 4 4 16155
90% 181 204 49
70% 181 204 58
50% 181 204 87
40% 181 204 112
30% 181 204 131
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 515
95% 163 180 55
90% 163 180 57
70% 163 180 72
50% 163 180 119
40% 163 180 143
30% 163 180 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 184 209 17
95% 184 209 33
90% 184 209 37
70% 184 209 46
50% 218 287 38
40% 218 287 48
30% 218 287 71
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 182 206 21
95% 182 207 35
90% 182 207 38
70% 182 207 47
50% 216 283 43
40% 216 284 51
30% 216 284 73
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 147 156 52
95% 182 205 44
90% 182 205 46
70% 182 205 56
50% 182 205 86
40% 182 205 111
30% 182 205 130
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 178 196 32
95% 178 196 51
90% 178 196 53
70% 178 196 64
50% 178 196 97
40% 178 196 120
30% 178 196 143
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 162 179 36
95% 162 179 56
90% 162 179 59
70% 162 179 73
50% 181 220 77
40% 181 220 100
30% 181 220 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 180 199 30
95% 183 207 37
90% 183 207 40
70% 183 207 49
50% 217 284 40
40% 217 285 50
30% 217 285 72
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 183 206 22
95% 183 206 40
90% 183 206 42
70% 183 206 51
50% 218 288 37
40% 218 288 47
30% 218 290 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 211 15
95% 191 217 28
90% 191 217 31
70% 191 217 41
50% 191 217 78
40% 191 217 102
30% 208 256 85
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 184 210 16
95% 184 211 32
90% 184 211 35
70% 184 211 44
50% 205 254 51
40% 205 255 67
30% 205 255 88
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18014
95% 4 4 15643
90% 184 210 36
70% 184 210 45
50% 220 290 36
40% 221 292 46
30% 242 347 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 90 160
95% 182 206 42
90% 182 206 44
70% 182 206 53
50% 216 284 42
40% 216 284 52
30% 236 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.