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CRYSTAL STRUCTURE OF THE 30S RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS IN COMPLEX WITH EDEINE
Sequence Clustering and Redundancy Reduction Results
1I95
Sequence Clusters for the Sequence Entities in PDB 1I95
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 252 29
95% 227 254 48
90% 227 254 51
70% 227 254 63
50% 299 369 34
40% 299 369 48
30% 299 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 255 27
95% 227 255 44
90% 227 255 47
70% 227 255 59
50% 293 363 42
40% 303 403 39
30% 303 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 189 224 37
95% 227 262 36
90% 227 262 38
70% 293 375 24
50% 293 375 33
40% 293 375 47
30% 293 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 256 24
95% 227 256 42
90% 227 256 45
70% 227 256 57
50% 293 365 39
40% 293 365 53
30% 301 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 254 28
95% 227 254 49
90% 227 254 52
70% 227 254 64
50% 227 254 99
40% 227 254 124
30% 227 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 258 21
95% 232 263 35
90% 232 263 37
70% 232 263 48
50% 301 376 32
40% 301 376 45
30% 301 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 250 31
95% 227 255 46
90% 227 255 49
70% 227 255 61
50% 227 255 97
40% 227 255 122
30% 293 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17624
95% 4 4 15289
90% 226 253 53
70% 226 253 65
50% 226 253 100
40% 226 253 126
30% 226 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 49 463
95% 204 221 64
90% 204 221 68
70% 204 221 81
50% 204 221 116
40% 204 221 144
30% 204 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 204 223 38
95% 204 223 63
90% 204 223 67
70% 204 223 80
50% 295 366 38
40% 295 366 52
30% 295 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 227 255 25
95% 227 256 39
90% 227 256 43
70% 227 256 55
50% 227 256 96
40% 293 363 55
30% 293 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 184 193 43
95% 227 254 47
90% 227 254 50
70% 227 254 62
50% 227 254 98
40% 227 254 123
30% 227 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 220 238 34
95% 220 238 55
90% 220 238 59
70% 220 238 71
50% 220 238 110
40% 220 238 133
30% 220 238 153
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 202 219 39
95% 202 219 66
90% 202 219 70
70% 202 219 83
50% 244 282 81
40% 244 282 101
30% 244 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 225 248 32
95% 228 256 40
90% 228 256 44
70% 228 256 56
50% 294 363 40
40% 294 364 54
30% 294 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 255 26
95% 228 255 43
90% 228 255 46
70% 228 255 58
50% 295 367 37
40% 295 367 51
30% 295 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 230 260 18
95% 236 266 34
90% 236 266 36
70% 236 266 47
50% 236 266 88
40% 236 266 112
30% 262 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 259 20
95% 229 260 37
90% 229 260 39
70% 229 260 51
50% 256 308 57
40% 256 309 74
30% 256 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 16942
95% 4 4 14807
90% 229 259 40
70% 229 259 52
50% 297 369 36
40% 298 371 49
30% 307 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 113 134
95% 227 255 45
90% 227 255 48
70% 227 255 60
50% 293 363 41
40% 293 363 56
30% 301 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.