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CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3
Sequence Clustering and Redundancy Reduction Results
1I94
Sequence Clusters for the Sequence Entities in PDB 1I94
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 257 29
95% 87 259 47
90% 87 259 51
70% 87 259 61
50% 127 374 34
40% 127 374 46
30% 127 379 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 260 26
95% 87 260 43
90% 87 260 46
70% 87 260 57
50% 121 368 42
40% 125 408 40
30% 125 408 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 55 229 36
95% 87 267 36
90% 87 267 38
70% 121 380 24
50% 121 380 33
40% 121 380 45
30% 121 380 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 261 22
95% 87 261 41
90% 87 261 43
70% 87 261 55
50% 121 370 39
40% 121 370 53
30% 123 406 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 259 27
95% 87 259 48
90% 87 259 52
70% 87 259 62
50% 87 259 97
40% 87 259 123
30% 87 259 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 263 20
95% 91 268 35
90% 91 268 37
70% 91 268 48
50% 128 381 32
40% 128 381 43
30% 128 381 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 255 30
95% 87 260 45
90% 87 260 48
70% 87 260 59
50% 87 260 94
40% 87 260 120
30% 121 368 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 17695
95% 1 4 15352
90% 87 258 53
70% 87 258 63
50% 87 258 99
40% 87 258 124
30% 87 258 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 49 464
95% 82 224 63
90% 82 224 67
70% 82 224 81
50% 82 224 115
40% 82 224 141
30% 82 224 162
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 226 37
95% 82 226 62
90% 82 226 65
70% 82 226 80
50% 122 371 38
40% 122 371 51
30% 122 371 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 260 24
95% 87 261 38
90% 87 261 41
70% 87 261 52
50% 87 261 92
40% 121 368 55
30% 121 368 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 198 43
95% 87 259 46
90% 87 259 50
70% 87 259 60
50% 87 259 96
40% 87 259 122
30% 87 259 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 241 34
95% 87 241 55
90% 87 241 58
70% 87 241 69
50% 87 241 107
40% 87 241 130
30% 87 241 151
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 222 39
95% 81 222 65
90% 81 222 69
70% 81 222 82
50% 93 285 76
40% 93 285 100
30% 93 285 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 253 31
95% 87 261 39
90% 87 261 42
70% 87 261 53
50% 121 368 40
40% 121 369 54
30% 121 369 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 87 260 25
95% 87 260 42
90% 87 260 44
70% 87 260 56
50% 122 372 37
40% 122 372 50
30% 122 374 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 265 18
95% 95 271 33
90% 95 271 35
70% 95 271 47
50% 95 271 87
40% 95 271 112
30% 119 318 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 264 19
95% 88 265 37
90% 88 265 39
70% 88 265 49
50% 111 313 56
40% 111 314 72
30% 111 314 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 17008
95% 1 4 14867
90% 88 264 40
70% 88 264 50
50% 124 374 35
40% 125 376 47
30% 128 413 52
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 113 134
95% 87 260 44
90% 87 260 47
70% 87 260 58
50% 121 368 41
40% 121 368 56
30% 123 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.