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An Information Portal to 110790 Biological Macromolecular Structures

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3
Sequence Clustering and Redundancy Reduction Results
1I94
Sequence Clusters for the Sequence Entities in PDB 1I94
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 218 36
95% 92 219 51
90% 92 219 55
70% 92 219 67
50% 115 306 33
40% 115 306 43
30% 129 360 42
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 220 34
95% 92 220 47
90% 92 220 51
70% 92 220 62
50% 109 300 42
40% 125 361 30
30% 125 362 41
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 183 46
95% 92 227 38
90% 92 227 42
70% 109 311 23
50% 109 312 32
40% 109 312 42
30% 109 312 57
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 221 32
95% 92 221 45
90% 92 221 49
70% 92 221 60
50% 112 305 38
40% 112 305 50
30% 126 361 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 219 35
95% 92 219 52
90% 92 219 56
70% 92 220 65
50% 92 220 92
40% 92 220 113
30% 92 220 126
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 223 29
95% 96 228 26
90% 96 228 31
70% 96 228 43
50% 116 313 29
40% 116 314 40
30% 116 314 55
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 215 37
95% 92 220 49
90% 92 220 53
70% 92 220 64
50% 92 220 91
40% 92 221 112
30% 112 303 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 19104
95% 1 4 16475
90% 92 218 58
70% 92 218 69
50% 92 218 94
40% 92 218 116
30% 92 218 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 49 525
95% 87 194 64
90% 87 194 66
70% 87 194 79
50% 87 194 111
40% 87 194 130
30% 87 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 223 27
95% 93 223 41
90% 93 223 46
70% 93 223 57
50% 110 303 37
40% 110 303 48
30% 110 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 220 30
95% 92 221 42
90% 92 221 47
70% 92 221 58
50% 109 299 41
40% 109 300 51
30% 109 300 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 170 49
95% 92 219 50
90% 92 219 54
70% 92 219 66
50% 92 219 93
40% 92 219 114
30% 92 219 127
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 210 40
95% 92 210 59
90% 92 210 62
70% 92 210 73
50% 92 210 98
40% 92 210 120
30% 92 210 133
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 193 45
95% 86 193 65
90% 86 193 67
70% 86 193 80
50% 89 236 78
40% 89 236 99
30% 89 236 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 213 38
95% 92 221 43
90% 92 221 48
70% 92 221 59
50% 109 300 39
40% 109 301 49
30% 109 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 220 33
95% 92 220 46
90% 92 220 50
70% 92 220 61
50% 110 304 36
40% 110 304 47
30% 110 306 65
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 94 225 24
95% 100 231 24
90% 100 231 29
70% 100 231 41
50% 100 231 83
40% 100 231 105
30% 116 270 79
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 224 26
95% 93 225 40
90% 93 225 44
70% 93 225 55
50% 111 268 51
40% 111 269 62
30% 111 269 81
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 18383
95% 1 4 15955
90% 93 224 45
70% 93 224 56
50% 112 306 34
40% 113 308 44
30% 128 365 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 90 167
95% 92 220 48
90% 92 220 52
70% 92 220 63
50% 109 300 43
40% 109 300 52
30% 123 356 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.