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An Information Portal to 108263 Biological Macromolecular Structures

CRYSTAL STRUCTURES OF THE SMALL RIBOSOMAL SUBUNIT WITH TETRACYCLINE, EDEINE AND IF3
Sequence Clustering and Redundancy Reduction Results
1I94
Sequence Clusters for the Sequence Entities in PDB 1I94
Entity #1: Chains: A - 16S RRNA rna, length: 1514 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 197 29
95% 81 198 45
90% 81 198 47
70% 81 198 59
50% 104 282 35
40% 104 282 45
30% 118 333 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 199 25
95% 81 199 40
90% 81 199 42
70% 81 199 54
50% 98 276 42
40% 114 333 35
30% 114 333 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 131 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 166 36
95% 81 206 31
90% 81 206 33
70% 98 288 24
50% 98 288 34
40% 98 288 44
30% 98 288 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 125 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 200 22
95% 81 200 38
90% 81 200 40
70% 81 200 51
50% 101 281 39
40% 101 281 50
30% 115 334 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 198 26
95% 81 198 46
90% 81 198 48
70% 81 198 60
50% 81 198 92
40% 81 198 114
30% 81 198 138
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 202 20
95% 85 207 30
90% 85 207 32
70% 85 207 43
50% 105 289 33
40% 105 289 43
30% 105 289 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 194 30
95% 81 199 42
90% 81 199 44
70% 81 199 56
50% 81 199 89
40% 81 199 112
30% 101 279 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 18605
95% 1 4 16054
90% 81 197 49
70% 81 197 61
50% 81 197 93
40% 81 197 116
30% 81 197 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 87 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 49 508
95% 76 174 71
90% 76 174 75
70% 76 174 89
50% 76 174 130
40% 76 174 148
30% 76 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 202 19
95% 82 202 33
90% 82 202 36
70% 82 202 47
50% 99 279 38
40% 99 279 49
30% 99 279 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 255 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 199 23
95% 81 200 35
90% 81 200 38
70% 81 200 48
50% 81 200 88
40% 98 276 53
30% 98 276 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 69 149 54
95% 81 198 44
90% 81 198 46
70% 81 198 58
50% 81 198 91
40% 81 198 113
30% 81 198 137
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 189 32
95% 81 189 52
90% 81 189 55
70% 81 189 67
50% 81 189 112
40% 81 189 135
30% 81 189 153
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 238 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 75 173 48
95% 75 173 72
90% 75 173 76
70% 75 173 91
50% 78 214 76
40% 78 214 102
30% 78 214 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 80 192 31
95% 81 200 36
90% 81 200 39
70% 81 200 49
50% 98 276 40
40% 98 277 51
30% 98 277 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 199 24
95% 81 199 39
90% 81 199 41
70% 81 199 52
50% 99 280 37
40% 99 280 48
30% 99 282 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 204 17
95% 89 210 29
90% 89 210 31
70% 89 210 42
50% 89 210 82
40% 89 210 107
30% 105 248 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 203 18
95% 82 204 32
90% 82 204 34
70% 82 204 44
50% 100 246 54
40% 100 247 71
30% 100 247 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 17903
95% 1 4 15549
90% 82 203 35
70% 82 203 45
50% 101 282 36
40% 102 284 46
30% 117 338 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 90 158
95% 81 199 41
90% 81 199 43
70% 81 199 55
50% 98 276 41
40% 98 276 54
30% 112 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.