Sequence Similarity Clusters for the Entities in PDB 1I8M

Entity #1 | Chains: T
5'-D(*TP*TP*TP*TP*T)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(P*TP*T)-3' dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,L
ANTIBODY LIGHT CHAIN FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 4652
95 % 5 26 942
90 % 9 37 684
70 % 567 1726 2
50 % 1410 4210 1
40 % 1410 4211 1
30 % 1564 4962 1
Entity #4 | Chains: B,H
ANTIBODY HEAVY CHAIN FAB protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 6 4609
95 % 3 6 5267
90 % 7 11 3339
70 % 679 2036 1
50 % 1411 4210 1
40 % 1411 4211 1
30 % 1565 4962 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.