Sequence Similarity Clusters for the Entities in PDB 1I8M

Entity #1 | Chains: T
5'-D(*TP*TP*TP*TP*T)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(P*TP*T)-3' dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,L
ANTIBODY LIGHT CHAIN FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5070
95 % 5 26 1023 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 9 37 761
70 % 746 2287 1
50 % 1529 4633 1
40 % 1529 4633 1
30 % 1717 5461 1
Entity #4 | Chains: B,H
ANTIBODY HEAVY CHAIN FAB protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5021
95 % 3 6 5720 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.8
PDBFlex
90 % 7 11 3558
70 % 738 2244 2
50 % 1530 4633 1
40 % 1530 4633 1
30 % 1718 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.