Sequence Similarity Clusters for the Entities in PDB 1I8M

Entity #1 | Chains: T
5'-D(*TP*TP*TP*TP*T)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(P*TP*T)-3' dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,L
ANTIBODY LIGHT CHAIN FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5337
95 % 5 26 1072 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 9 37 791
70 % 828 2474 1
50 % 1693 5011 1
40 % 1693 5011 1
30 % 1933 5941 1
Entity #4 | Chains: B,H
ANTIBODY HEAVY CHAIN FAB protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5289
95 % 3 6 5981 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.8
PDBFlex
90 % 7 11 3736
70 % 817 2424 2
50 % 1694 5011 1
40 % 1694 5011 1
30 % 1934 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures