Sequence Similarity Clusters for the Entities in PDB 1I8M

Entity #1 | Chains: T
5'-D(*TP*TP*TP*TP*T)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(P*TP*T)-3' dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,L
ANTIBODY LIGHT CHAIN FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5257
95 % 5 26 1058 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 1.9
PDBFlex
90 % 9 37 784
70 % 806 2426 1
50 % 1648 4913 1
40 % 1648 4913 1
30 % 1849 5780 1
Entity #4 | Chains: B,H
ANTIBODY HEAVY CHAIN FAB protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 5207
95 % 3 6 5903 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.8
PDBFlex
90 % 7 11 3688
70 % 795 2376 2
50 % 1649 4913 1
40 % 1649 4913 1
30 % 1850 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures