Sequence Similarity Clusters for the Entities in PDB 1I8M

Entity #1 | Chains: T
5'-D(*TP*TP*TP*TP*T)-3' dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: D
5'-D(P*TP*T)-3' dna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,L
ANTIBODY LIGHT CHAIN FAB protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 4990
95 % 5 26 1016 Flexibility: Low
Max RMSD: 5.1, Avg RMSD: 2.0
PDBFlex
90 % 9 37 757
70 % 738 2264 1
50 % 1513 4587 1
40 % 1513 4587 1
30 % 1692 5394 1
Entity #4 | Chains: B,H
ANTIBODY HEAVY CHAIN FAB protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 4940
95 % 3 6 5630 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.8
PDBFlex
90 % 7 11 3519
70 % 730 2222 2
50 % 1514 4587 1
40 % 1514 4587 1
30 % 1693 5394 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.