Sequence Similarity Clusters for the Entities in PDB 1I8L

Entity #1 | Chains: A,B
T LYMPHOCYTE ACTIVATION ANTIGEN CD80 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34743
95 % 1 2 24746 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 23911
70 % 1 2 21706
50 % 1 2 18646
40 % 1 2 16485
30 % 1 2 13822
Entity #2 | Chains: C,D
CYTOTOXIC T-LYMPHOCYTE PROTEIN 4 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 15830
95 % 6 9 4203 Flexibility: Medium
Max RMSD: 24.0, Avg RMSD: 6.3
PDBFlex
90 % 6 9 4252
70 % 7 10 3925
50 % 11 14 2308
40 % 11 14 2288
30 % 12 15 2073

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures