Sequence Similarity Clusters for the Entities in PDB 1I8L

Entity #1 | Chains: A,B
T LYMPHOCYTE ACTIVATION ANTIGEN CD80 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40392
95 % 1 2 22673 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 21937
70 % 1 2 20097
50 % 1 2 17427
40 % 1 2 15541
30 % 1 2 13287
Entity #2 | Chains: C,D
CYTOTOXIC T-LYMPHOCYTE PROTEIN 4 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44571
95 % 6 8 5895 Flexibility: Medium
Max RMSD: 23.9, Avg RMSD: 7.7
PDBFlex
90 % 6 8 5886
70 % 7 9 4991
50 % 11 13 2635
40 % 11 13 2595
30 % 12 14 2359

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.