Sequence Similarity Clusters for the Entities in PDB 1I8L

Entity #1 | Chains: A,B
T LYMPHOCYTE ACTIVATION ANTIGEN CD80 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41553
95 % 1 2 23376 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 2 22600
70 % 1 2 20635
50 % 1 2 17859
40 % 1 2 15919
30 % 1 2 13612
Entity #2 | Chains: C,D
CYTOTOXIC T-LYMPHOCYTE PROTEIN 4 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45801
95 % 6 8 6078 Flexibility: Medium
Max RMSD: 24.0, Avg RMSD: 6.3
PDBFlex
90 % 6 8 6072
70 % 7 9 5149
50 % 11 13 2712
40 % 11 13 2671
30 % 12 14 2419

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures