Sequence Similarity Clusters for the Entities in PDB 1I8L

Entity #1 | Chains: A,B
T LYMPHOCYTE ACTIVATION ANTIGEN CD80 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41032
95 % 1 2 23104 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 2 22348
70 % 1 2 20415
50 % 1 2 17680
40 % 1 2 15762
30 % 1 2 13475
Entity #2 | Chains: C,D
CYTOTOXIC T-LYMPHOCYTE PROTEIN 4 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45226
95 % 6 8 5991 Flexibility: Medium
Max RMSD: 24.0, Avg RMSD: 6.3
PDBFlex
90 % 6 8 5984
70 % 7 9 5082
50 % 11 13 2666
40 % 11 13 2629
30 % 12 14 2390

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.