Sequence Similarity Clusters for the Entities in PDB 1I85

Entity #1 | Chains: A,B
T LYMPHOCYTE ACTIVATION ANTIGEN CD86 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23734
95 % 2 2 20313 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 19754
70 % 2 2 18136
50 % 2 2 15756
40 % 2 2 14042
30 % 2 2 12012
Entity #2 | Chains: C,D
CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED PROTEIN 4 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6707
95 % 7 8 6054 Flexibility: Medium
Max RMSD: 24.0, Avg RMSD: 6.3
PDBFlex
90 % 7 8 6049
70 % 8 9 5125
50 % 12 13 2688
40 % 12 13 2649
30 % 13 14 2407

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.