Sequence Similarity Clusters for the Entities in PDB 1I85

Entity #1 | Chains: A,B
T LYMPHOCYTE ACTIVATION ANTIGEN CD86 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22731
95 % 2 2 20334 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 19747
70 % 2 2 18123
50 % 2 2 15744
40 % 2 2 13974
30 % 2 2 11735
Entity #2 | Chains: C,D
CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED PROTEIN 4 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15960
95 % 7 9 4220 Flexibility: Medium
Max RMSD: 24.0, Avg RMSD: 5.2
PDBFlex
90 % 7 9 4270
70 % 8 10 3940
50 % 12 14 2324
40 % 12 14 2305
30 % 13 15 2081

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures