Sequence Similarity Clusters for the Entities in PDB 1I85

Entity #1 | Chains: A,B
T LYMPHOCYTE ACTIVATION ANTIGEN CD86 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24631
95 % 2 2 21013 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 20410
70 % 2 2 18740
50 % 2 2 16247
40 % 2 2 14461
30 % 2 2 12366
Entity #2 | Chains: C,D
CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED PROTEIN 4 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6948
95 % 7 8 6259 Flexibility: Medium
Max RMSD: 24.0, Avg RMSD: 6.3
PDBFlex
90 % 7 8 6260
70 % 8 9 5321
50 % 12 13 2794
40 % 12 13 2744
30 % 13 14 2492

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures