Sequence Similarity Clusters for the Entities in PDB 1I85

Entity #1 | Chains: A,B
T LYMPHOCYTE ACTIVATION ANTIGEN CD86 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 24292
95 % 2 2 20742 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 2 2 20156
70 % 2 2 18517
50 % 2 2 16064
40 % 2 2 14305
30 % 2 2 12235
Entity #2 | Chains: C,D
CYTOTOXIC T-LYMPHOCYTE-ASSOCIATED PROTEIN 4 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 6853
95 % 7 8 6177 Flexibility: Medium
Max RMSD: 24.0, Avg RMSD: 6.3
PDBFlex
90 % 7 8 6173
70 % 8 9 5244
50 % 12 13 2760
40 % 12 13 2712
30 % 13 14 2461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures