Sequence Similarity Clusters for the Entities in PDB 1I7D

Entity #1 | Chains: B
5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA TOPOISOMERASE III protein, length: 659 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49052
95 % 1 7 5088 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.9
PDBFlex
90 % 1 7 5107
70 % 1 7 5050
50 % 1 7 4830
40 % 1 7 4570
30 % 1 7 4183

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.