Sequence Similarity Clusters for the Entities in PDB 1I7D

Entity #1 | Chains: B
5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA TOPOISOMERASE III protein, length: 659 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51031
95 % 1 7 5361 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.9
PDBFlex
90 % 1 7 5385
70 % 1 7 5296
50 % 1 7 5047
40 % 1 7 4774
30 % 1 7 4359

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures