Sequence Similarity Clusters for the Entities in PDB 1I7A

Entity #1 | Chains: A,B,C,D
HOMER 2B protein, length: 111 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24543
95 % 1 1 21840 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 1 21163
70 % 4 4 10731
50 % 4 4 9640
40 % 4 4 8707
30 % 22 26 1209
Entity #2 | Chains: E
PHE-ALA-PHE protein, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DDW 1 A GLGF-DOMAIN PROTEIN HOMER HOMER EVH1 DOMAIN RESIDUES 1-120 10116
2 2P8V 1 A Homer protein homolog 3 9606
3 1DDV 1 A GLGF-DOMAIN PROTEIN HOMER HOMER EVH1 RESIDUES 1-111 10116
4 1I7A 1 A, B, C, D HOMER 2B EVH1 DOMAIN (N-TERMINAL) 10090