Sequence Similarity Clusters for the Entities in PDB 1I6V

Entity #1 | Chains: A,B
DNA-DIRECTED RNA POLYMERASE protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34972
95 % 4 13 1354 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 4 13 1372
70 % 40 57 196
50 % 40 57 239
40 % 47 91 153
30 % 48 92 167
Entity #2 | Chains: C
DNA-DIRECTED RNA POLYMERASE protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48374
95 % 4 13 3131 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.5
PDBFlex
90 % 40 57 431
70 % 40 57 476
50 % 51 70 482
40 % 51 70 517
30 % 51 70 516
Entity #3 | Chains: D
DNA-DIRECTED RNA POLYMERASE protein, length: 1264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 48335
95 % 1 2 24386 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 2 23594
70 % 1 2 21568
50 % 1 2 18731
40 % 1 2 16696
30 % 1 2 14345
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 2832
95 % 4 12 3527 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.2
PDBFlex
90 % 40 56 451
70 % 40 56 489
50 % 40 56 556
40 % 40 56 593
30 % 40 56 587

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.