Sequence Similarity Clusters for the Entities in PDB 1I6V

Entity #1 | Chains: A,B
DNA-DIRECTED RNA POLYMERASE protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37348
95 % 4 13 1455 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 4 13 1478
70 % 41 59 219
50 % 41 59 252
40 % 49 100 154
30 % 50 101 165
Entity #2 | Chains: C
DNA-DIRECTED RNA POLYMERASE protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51343
95 % 4 13 3372 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 2.6
PDBFlex
90 % 41 59 500
70 % 41 59 540
50 % 53 78 469
40 % 53 78 513
30 % 53 78 505
Entity #3 | Chains: D
DNA-DIRECTED RNA POLYMERASE protein, length: 1264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51306
95 % 1 2 26022
90 % 1 2 25135
70 % 1 2 22819
50 % 1 2 19741
40 % 1 2 17575
30 % 1 2 15100
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 12 3062
95 % 4 12 3771
90 % 41 58 515
70 % 41 58 552
50 % 41 58 581
40 % 41 58 615
30 % 41 58 607

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures