Sequence Similarity Clusters for the Entities in PDB 1I6V

Entity #1 | Chains: A,B
DNA-DIRECTED RNA POLYMERASE protein, length: 314 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43127
95 % 4 13 1503 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.6
PDBFlex
90 % 4 13 1527
70 % 41 59 238
50 % 41 59 260
40 % 61 119 143
30 % 62 120 155
Entity #2 | Chains: C
DNA-DIRECTED RNA POLYMERASE protein, length: 1118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 13 3162
95 % 4 13 3474 Flexibility: Low
Max RMSD: 4.5, Avg RMSD: 2.6
PDBFlex
90 % 41 59 513
70 % 41 59 553
50 % 53 78 477
40 % 67 142 244
30 % 151 308 143
Entity #3 | Chains: D
DNA-DIRECTED RNA POLYMERASE protein, length: 1264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 63085
95 % 1 3 22872 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 3 22138
70 % 41 59 533
50 % 53 78 470
40 % 67 142 240
30 % 67 142 254
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 12 3380
95 % 4 12 3691 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 41 58 522
70 % 41 58 561
50 % 41 58 593
40 % 41 58 632
30 % 41 58 631

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures