Sequence Similarity Clusters for the Entities in PDB 1I6U

Entity #1 | Chains: C,D
16S RRNA FRAGMENT rna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
30S RIBOSOMAL PROTEIN S8P protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46239
95 % 1 1 34660 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 33100
70 % 1 5 12319
50 % 1 125 287
40 % 1 125 306
30 % 9 577 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1I6U 2 A, B 30S RIBOSOMAL PROTEIN S8P 2190
2 4V88 24 AW, CW 40S ribosomal protein S22-A 4932
3 4U4R 24 D2, d2 40S ribosomal protein S22-A 4932
4 4U3U 24 D2, d2 40S ribosomal protein S22-A 4932
5 5TBW 71 X, d2 40S ribosomal protein S22-A 4932
6 4U3M 24 D2, d2 40S ribosomal protein S22-A 4932
7 4U3N 24 D2, d2 40S ribosomal protein S22-A 4932
8 4U52 24 D2, d2 40S ribosomal protein S22-A 4932
9 4U4Q 24 D2, d2 40S ribosomal protein S22-A 4932
10 4U6F 24 D2, d2 40S ribosomal protein S22-A 4932
11 4U4U 24 D2, d2 40S ribosomal protein S22-A 4932
12 4U4Z 24 D2, d2 40S ribosomal protein S22-A 4932
13 4U4Y 24 D2, d2 40S ribosomal protein S22-A 4932
14 4U4N 24 D2, d2 40S ribosomal protein S22-A 4932
15 4U55 24 D2, d2 40S ribosomal protein S22-A 4932
16 5DAT 24 D2 40S ribosomal protein S22-A 4932
17 5DAT 80 d2 40S ribosomal protein S22-A 4932
18 5I4L 24 D2, d2 40S ribosomal protein S22-A 4932
19 4U51 24 D2, d2 40S ribosomal protein S22-A 4932
20 5OBM 68 D2, d2 40S ribosomal protein S22-A 4932
21 4U53 24 D2, d2 40S ribosomal protein S22-A 4932
22 4U50 24 D2, d2 40S ribosomal protein S22-A 4932
23 5NDV 68 D2, d2 40S ribosomal protein S22-A 4932
24 5LYB 24 D2, d2 40S ribosomal protein S22-A 4932
25 4U56 24 D2, d2 40S ribosomal protein S22-A 4932
26 5TGA 24 D2, d2 40S ribosomal protein S22-A 4932
27 5MEI 71 X, d2 40S ribosomal protein S22-A 4932
28 5FCJ 24 D2, d2 40S ribosomal protein S22-A 4932
29 4U4O 24 D2, d2 40S ribosomal protein S22-A 4932
30 5DGV 24 D2, d2 40S ribosomal protein S22-A 4932
31 5DGE 24 D2, d2 40S ribosomal protein S22-A 4932
32 5NDW 17 D2, d2 40S ribosomal protein S22-A 4932
33 4BTS 18 AH, BH, CH, DH 40S RIBOSOMAL PROTEIN RPS22E 5911
34 5NDG 24 D2, d2 40S ribosomal protein S22-A 4932
35 5FCI 24 D2, d2 40S ribosomal protein S22-A 4932
36 5DC3 24 D2, d2 40S ribosomal protein S22-A 4932
37 5DGF 24 D2, d2 40S ribosomal protein S22-A 4932
38 4V5O 17 AH, BH RIBOSOMAL PROTEIN S8 CONTAINING PROTEIN 5911
39 5TGM 24 D2, d2 40S ribosomal protein S22-A 4932
40 4V7R 16 AO, CO 40S ribosomal protein S22-A 4932
41 5VYC 16 W1, W2, W3, W4, W5, W6 40S ribosomal protein S15a 9606
42 4KZZ 23 W 40S Ribosomal Protein S15A 9986
43 4KZX 23 W 40S ribosomal protein S15A 9986
44 4KZY 23 W 40S Ribosomal Protein S15A 9986
45 6EML 24 b 40S ribosomal protein S22-A 4932
46 6EK0 76 SW 40S ribosomal protein S15a 9606
47 6AZ1 10 J ribosomal protein S8 5661
48 5OQL 45 w 40S ribosomal protein S22-like protein 209285
49 5OPT 22 e 40S ribosomal protein S15a, putative 5693
50 5WLC 13 LE rpS22_uS8 4932
51 5XYI 24 W Ribosomal protein S15a 5722
52 5XXU 24 W Ribosomal protein uS8 5811
53 5OA3 27 W 40S ribosomal protein S15a 9606
54 5WYJ 47 SX 40S ribosomal protein S22-A 4932
55 5WYK 43 SX 40S ribosomal protein S22-A 4932
56 5TZS 14 E rpS22_uS8 4932
57 5MC6 29 b 40S ribosomal protein S22-A 4932
58 5M1J 30 W2 40S ribosomal protein S22-A 4932
59 5LZS 73 WW Uncharacterized protein 9986
60 5LZT 74 WW uS8 9986
61 5LZU 73 WW uS8 9986
62 5LZV 74 WW uS8 9986
63 5LZW 74 WW uS8 9986
64 5LZX 74 WW uS8 9986
65 5LZY 72 WW uS8 9986
66 5LZZ 74 WW uS8 9986
67 5T2A 65 AJ uS8 5661
68 5T2C 57 AP 40S ribosomal protein S15a 9606
69 5LL6 14 b 40S ribosomal protein S22-A 4932
70 5LKS 75 SW 40S ribosomal protein S15a 9606
71 5K0Y 23 a ribosomal protein uS8 9986
72 5JUO 72 TB uS8 (yeast S22) 4932
73 5JUP 72 TB uS8 (yeast S22) 4932
74 5JUS 72 TB uS8 (yeast S22) 4932
75 5JUT 72 TB uS8 (yeast S22) 4932
76 5JUU 72 TB uS8 (yeast S22) 4932
77 5JPQ 32 z uS8 209285
78 5JB3 15 I 30S ribosomal protein S8 30S ribosomal protein uS8 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
79 5JBH 26 I 30S ribosomal protein uS8 30S ribosomal protein uS8 model from Pyrococcus furiosus (PDB code 4V6U) used for fitting 29292
80 5IT7 70 W 40S ribosomal protein S22 28985
81 5IT9 23 W Ribosomal protein uS8 28985
82 5FLX 24 W 40S RIBOSOMAL PROTEIN S15A 9986
83 3JBN 7 K 40S ribosomal protein uS8 5833
84 3JBO 29 K 40S ribosomal protein uS8 5833
85 3JBP 7 K 40S ribosomal protein uS8 5833
86 3JAP 26 W uS8 28985
87 3JAQ 26 W uS8 28985
88 3JAM 24 W uS8 28985
89 3JAN 66 SW Ribosomal protein uS8 SEE REMARK 999 9986
90 3JAJ 67 SW Ribosomal protein uS8 SEE REMARK 999 9986
91 3JAG 74 WW uS8 9986
92 3JAH 74 WW uS8 9986
93 3JAI 74 WW uS8 9986
94 5A2Q 25 W RIBOSOMAL PROTEIN US8 9606
95 4UG0 77 SW 40S RIBOSOMAL PROTEIN S15A 9606
96 5AJ0 72 BW 40S ribosomal protein S15a 9606
97 4UER 18 H US8 4934
98 4D61 24 W 40S RIBOSOMAL PROTEIN S15A 9986
99 4D5L 24 W 40S RIBOSOMAL PROTEIN US8 9986
100 4V3P 27 SH Ribosomal protein S15 4565
101 3J81 24 W uS8 28985
102 3J80 14 W uS8 28985
103 3J7P 72 SW Ribosomal protein uS8 9823
104 3J7R 73 SW Ribosomal protein uS8 9823
105 4UJC 73 CW 40S RIBOSOMAL PROTEIN US8 9986
106 4UJD 73 CW 40S RIBOSOMAL PROTEIN US8 9986
107 3J7A 11 K 40S ribosomal protein uS8 5833
108 3J77 68 22 40S ribosomal protein S22 4932
109 3J78 68 22 40S ribosomal protein S22 4932
110 3J6X 69 22 40S ribosomal protein S22 4932
111 3J6Y 69 22 40S ribosomal protein S22 4932
112 4UJE 27 BW 40S RIBOSOMAL PROTEIN S15A 9986
113 4V92 25 BW US8 28985
114 4V7E 24 BW 40S ribosomal protein S8 4565
115 4V8Y 31 AW 40S RIBOSOMAL PROTEIN S22-A 4932
116 4V8Z 31 AW 40S RIBOSOMAL PROTEIN S22-A 4932
117 4V4N 21 BI 30S ribosomal protein S8P SEE REMARK 999 2190
118 4V6W 32 AW 40S ribosomal protein S15Aa 7227
119 4V6X 32 AW 40S ribosomal protein S15a 9606
120 4V8M 18 AJ 40S RIBOSOMAL PROTEIN S15A, PUTATIVE 185431
121 4V6U 3 AI 30S ribosomal protein S8P 2261
122 4V6I 9 AH 40S ribosomal protein rpS22 (S8p) 4932
123 4V7H 7 AH 40S ribosomal protein S22(A) 5541
124 4V5Z 15 Ah 40S Ribosomal protein S15ae 9612
125 4V4B 8 AH 40S ribosomal protein S22 4932