Sequence Similarity Clusters for the Entities in PDB 1I6U

Entity #1 | Chains: C,D
16S RRNA FRAGMENT rna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
30S RIBOSOMAL PROTEIN S8P protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33718
95 % 1 1 29055 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 27887
70 % 1 5 11249
50 % 1 140 272
40 % 11 630 19
30 % 11 630 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures