Sequence Similarity Clusters for the Entities in PDB 1I6U

Entity #1 | Chains: C,D
16S RRNA FRAGMENT rna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
30S RIBOSOMAL PROTEIN S8P protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34439
95 % 1 1 29665 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 28459
70 % 1 5 11503
50 % 1 153 260
40 % 11 659 19
30 % 11 659 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures