Sequence Similarity Clusters for the Entities in PDB 1I6U

Entity #1 | Chains: C,D
16S RRNA FRAGMENT rna, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
30S RIBOSOMAL PROTEIN S8P protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43977
95 % 1 1 33033 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 1 1 31599
70 % 1 5 11668
50 % 1 111 309
40 % 1 111 322
30 % 9 535 30

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.