Sequence Similarity Clusters for the Entities in PDB 1I6J

Entity #1 | Chains: B
5'-D(*GP*TP*CP*GP*TP*C)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*CP*GP*GP*GP*AP*CP*GP*AP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
REVERSE TRANSCRIPTASE protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 28 1665
95 % 13 28 1956 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 13 28 1995
70 % 13 28 2019
50 % 13 28 2047
40 % 13 28 2019
30 % 13 28 1917

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures