Sequence Similarity Clusters for the Entities in PDB 1I6J

Entity #1 | Chains: B
5'-D(*GP*TP*CP*GP*TP*C)-3' dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
5'-D(*AP*CP*GP*GP*GP*AP*CP*GP*AP*C)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
REVERSE TRANSCRIPTASE protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 31 1481
95 % 16 31 1731 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 0.9
PDBFlex
90 % 16 31 1767
70 % 16 31 1775
50 % 16 31 1813
40 % 16 31 1799
30 % 16 31 1756

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures