Sequence Similarity Clusters for the Entities in PDB 1I6H

Entity #1 | Chains: D
5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 124 176
95 % 57 124 242
90 % 57 124 251
70 % 57 134 256
50 % 58 142 252
40 % 58 142 273
30 % 58 142 290
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 115 203
95 % 53 115 289
90 % 53 115 302
70 % 53 115 326
50 % 53 115 357
40 % 53 116 380
30 % 53 116 383
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 120 183
95 % 55 120 253
90 % 55 120 261
70 % 55 120 298
50 % 55 120 327
40 % 55 120 353
30 % 55 120 360
Entity #2 | Chains: R
5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 113 206
95 % 53 113 291
90 % 53 113 305
70 % 53 113 329
50 % 53 123 328
40 % 53 123 355
30 % 53 123 363
Entity #4 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 114 204
95 % 53 115 286
90 % 53 115 298
70 % 53 115 322
50 % 53 125 323
40 % 54 133 309
30 % 54 136 313
Entity #5 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 110 209
95 % 51 110 301
90 % 51 110 316
70 % 51 110 337
50 % 51 111 364
40 % 51 111 397
30 % 51 111 398
Entity #6 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 125 171
95 % 58 125 236
90 % 58 125 246
70 % 58 125 277
50 % 58 126 309
40 % 58 135 303
30 % 58 135 321
Entity #7 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 119 188
95 % 55 119 254
90 % 55 119 262
70 % 55 119 299
50 % 55 130 295
40 % 55 130 318
30 % 55 130 332
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 124 175
95 % 57 125 237
90 % 57 125 247
70 % 57 125 279
50 % 57 125 317
40 % 57 125 338
30 % 57 136 316
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 114 205
95 % 53 114 290
90 % 53 114 304
70 % 53 114 328
50 % 53 115 351
40 % 53 115 384
30 % 53 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.