Sequence Similarity Clusters for the Entities in PDB 1I6H

Entity #1 | Chains: D
5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 119 162
95 % 55 119 230
90 % 55 119 240
70 % 55 121 266
50 % 56 129 265
40 % 56 129 288
30 % 56 129 305
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 111 201
95 % 51 111 290
90 % 51 111 302
70 % 51 111 323
50 % 51 111 348
40 % 51 112 372
30 % 51 112 375
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 117 172
95 % 55 117 245
90 % 55 117 254
70 % 55 117 287
50 % 55 117 318
40 % 55 117 344
30 % 55 117 352
Entity #2 | Chains: R
5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 109 206
95 % 51 109 294
90 % 51 109 306
70 % 51 109 328
50 % 51 111 338
40 % 51 111 373
30 % 51 111 377
Entity #4 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 50 110 203
95 % 51 111 287
90 % 51 111 300
70 % 51 111 321
50 % 51 113 335
40 % 52 121 321
30 % 52 124 328
Entity #5 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 108 208
95 % 51 108 296
90 % 51 108 310
70 % 51 108 331
50 % 51 109 350
40 % 51 109 381
30 % 51 109 383
Entity #6 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 120 159
95 % 56 120 224
90 % 56 120 235
70 % 56 120 271
50 % 56 121 302
40 % 56 122 320
30 % 56 122 335
Entity #7 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 116 176
95 % 55 116 248
90 % 55 116 257
70 % 55 116 291
50 % 55 119 306
40 % 55 119 332
30 % 55 119 342
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 119 161
95 % 55 120 226
90 % 55 120 237
70 % 55 120 273
50 % 55 120 307
40 % 55 120 333
30 % 55 123 332
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 110 205
95 % 51 110 293
90 % 51 110 305
70 % 51 110 327
50 % 51 111 341
40 % 51 111 376
30 % 51 114 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.