Sequence Similarity Clusters for the Entities in PDB 1I6H

Entity #1 | Chains: D
5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 64 172 185
95 % 64 172 238 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 64 172 245
70 % 65 206 207
50 % 66 214 224
40 % 66 214 253
30 % 66 214 266
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 133 245
95 % 60 133 312 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 60 133 321
70 % 60 133 370
50 % 61 152 402
40 % 61 154 417
30 % 61 154 419
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 168 190
95 % 62 168 244 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.0
PDBFlex
90 % 62 168 249
70 % 62 168 288
50 % 63 187 273
40 % 63 187 308
30 % 63 187 317
Entity #2 | Chains: R
5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 131 253
95 % 60 131 322 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 1.6
PDBFlex
90 % 60 131 332
70 % 61 150 337
50 % 61 165 357
40 % 61 165 394
30 % 61 165 398
Entity #4 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 133 244
95 % 60 133 311 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.2
PDBFlex
90 % 60 133 320
70 % 61 154 323
50 % 61 167 354
40 % 62 175 347
30 % 115 361 142
Entity #5 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 58 128 256
95 % 58 128 330 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.5
PDBFlex
90 % 58 128 340
70 % 58 128 388
50 % 58 128 465
40 % 58 128 506
30 % 58 128 504
Entity #6 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 65 173 183
95 % 65 173 234 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 65 173 242
70 % 66 192 235
50 % 66 194 257
40 % 66 207 269
30 % 66 207 283
Entity #7 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 167 191
95 % 62 167 245 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 62 167 250
70 % 62 167 292
50 % 63 202 248
40 % 63 202 277
30 % 63 202 290
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 172 187
95 % 64 173 236 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.0
PDBFlex
90 % 64 173 243
70 % 64 173 276
50 % 65 192 266
40 % 65 192 296
30 % 65 208 281
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 132 248
95 % 60 132 315 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.0
PDBFlex
90 % 60 132 324
70 % 61 151 332
50 % 61 153 392
40 % 61 153 418
30 % 61 168 392

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures