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RNA POLYMERASE II ELONGATION COMPLEX
Sequence Clustering and Redundancy Reduction Results
1I6H
Sequence Clusters for the Sequence Entities in PDB 1I6H
Entity #1: Chains: D - 5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3' dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 102 186
95% 52 102 265
90% 52 102 277
70% 52 103 286
50% 53 112 272
40% 53 112 301
30% 53 112 317
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 98 200
95% 48 98 284
90% 48 98 299
70% 48 98 315
50% 48 98 354
40% 48 99 362
30% 48 99 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 101 188
95% 52 101 270
90% 52 101 282
70% 52 101 300
50% 52 101 335
40% 52 101 357
30% 52 101 370
Entity #2: Chains: R - 5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 96 203
95% 48 96 288
90% 48 96 303
70% 48 96 321
50% 48 97 345
40% 48 97 366
30% 48 97 381
Entity #4: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 97 201
95% 48 98 281
90% 48 98 296
70% 48 98 313
50% 48 99 339
40% 49 108 308
30% 49 108 326
Entity #5: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 96 205
95% 48 96 289
90% 48 96 304
70% 48 96 322
50% 48 97 348
40% 48 97 368
30% 48 97 383
Entity #6: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 103 180
95% 53 103 254
90% 53 103 266
70% 53 103 291
50% 53 104 309
40% 53 104 336
30% 53 104 348
Entity #7: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 100 190
95% 52 100 274
90% 52 100 286
70% 52 100 306
50% 52 102 325
40% 52 102 347
30% 52 102 360
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 102 185
95% 52 103 255
90% 52 103 268
70% 52 103 292
50% 52 103 326
40% 52 103 348
30% 52 105 344
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 97 202
95% 48 97 287
90% 48 97 302
70% 48 97 319
50% 48 98 343
40% 48 98 364
30% 48 98 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.