Sequence Similarity Clusters for the Entities in PDB 1I6H

Entity #1 | Chains: D
5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 131 173
95 % 57 131 238
90 % 57 131 248
70 % 57 141 264
50 % 58 149 259
40 % 58 149 282
30 % 58 149 290
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 116 208
95 % 53 116 296
90 % 53 116 310
70 % 53 116 349
50 % 53 116 406
40 % 53 117 429
30 % 53 117 430
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 127 180
95 % 55 127 248
90 % 55 127 256
70 % 55 127 290
50 % 55 127 326
40 % 55 127 356
30 % 55 127 361
Entity #2 | Chains: R
5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 114 212
95 % 53 114 301
90 % 53 114 316
70 % 53 114 356
50 % 53 124 368
40 % 53 124 398
30 % 53 124 399
Entity #4 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 115 209
95 % 53 116 290
90 % 53 116 303
70 % 53 116 344
50 % 53 126 358
40 % 54 134 325
30 % 54 137 329
Entity #5 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 111 214
95 % 51 111 308
90 % 51 111 324
70 % 51 111 365
50 % 51 112 418
40 % 51 112 457
30 % 51 112 449
Entity #6 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 132 170
95 % 58 132 233
90 % 58 132 244
70 % 58 132 279
50 % 58 133 305
40 % 58 142 305
30 % 58 142 316
Entity #7 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 126 181
95 % 55 126 250
90 % 55 126 258
70 % 55 126 293
50 % 55 137 300
40 % 55 137 319
30 % 55 137 332
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 131 172
95 % 57 132 236
90 % 57 132 247
70 % 57 132 280
50 % 57 132 314
40 % 57 132 335
30 % 57 143 314
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 115 210
95 % 53 115 300
90 % 53 115 314
70 % 53 115 354
50 % 53 116 403
40 % 53 116 438
30 % 53 119 425

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.