Sequence Similarity Clusters for the Entities in PDB 1I6H

Entity #1 | Chains: D
5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3' dna, length: 13 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 124 176
95 % 57 124 241
90 % 57 124 251
70 % 57 134 254
50 % 58 142 252
40 % 58 142 273
30 % 58 142 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 115 203
95 % 53 115 285
90 % 53 115 299
70 % 53 115 323
50 % 53 115 354
40 % 53 116 376
30 % 53 116 382
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 120 181
95 % 55 120 251
90 % 55 120 260
70 % 55 120 296
50 % 55 120 325
40 % 55 120 351
30 % 55 120 359
Entity #2 | Chains: R
5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' rna, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 113 206
95 % 53 113 288
90 % 53 113 302
70 % 53 113 326
50 % 53 123 327
40 % 53 123 353
30 % 53 123 362
Entity #4 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 114 204
95 % 53 115 281
90 % 53 115 295
70 % 53 115 319
50 % 53 125 321
40 % 54 133 307
30 % 54 136 310
Entity #5 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 110 209
95 % 51 110 299
90 % 51 110 314
70 % 51 110 334
50 % 51 111 360
40 % 51 111 393
30 % 51 111 395
Entity #6 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 58 125 171
95 % 58 125 235
90 % 58 125 246
70 % 58 125 277
50 % 58 126 308
40 % 58 135 301
30 % 58 135 317
Entity #7 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 55 119 186
95 % 55 119 252
90 % 55 119 261
70 % 55 119 298
50 % 55 130 294
40 % 55 130 318
30 % 55 130 332
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 56 124 175
95 % 57 125 236
90 % 57 125 247
70 % 57 125 279
50 % 57 125 316
40 % 57 125 336
30 % 57 136 313
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 114 205
95 % 53 114 287
90 % 53 114 301
70 % 53 114 325
50 % 53 115 347
40 % 53 115 380
30 % 53 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.