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RNA POLYMERASE II ELONGATION COMPLEX
Sequence Clustering and Redundancy Reduction Results
1I6H
Sequence Clusters for the Sequence Entities in PDB 1I6H
Entity #1: Chains: D - 5'-D(P*AP*AP*AP*TP*GP*CP*CP*TP*GP*GP*TP*CP*T)-3' dna, length: 13 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 107 178
95% 52 107 253
90% 52 107 265
70% 52 108 270
50% 53 116 274
40% 53 116 302
30% 53 116 317
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 103 197
95% 48 103 278
90% 48 103 292
70% 48 103 309
50% 48 103 351
40% 48 104 364
30% 48 104 371
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 106 185
95% 52 106 261
90% 52 106 275
70% 52 106 292
50% 52 106 325
40% 52 106 349
30% 52 106 358
Entity #2: Chains: R - 5'-R(P*GP*AP*CP*CP*AP*GP*GP*CP*A)-3' rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 101 202
95% 48 101 285
90% 48 101 299
70% 48 101 315
50% 48 102 346
40% 48 102 369
30% 48 102 376
Entity #4: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 102 199
95% 48 103 274
90% 48 103 287
70% 48 103 306
50% 48 104 338
40% 49 112 313
30% 49 112 322
Entity #5: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 101 203
95% 48 101 287
90% 48 101 301
70% 48 101 317
50% 48 102 348
40% 48 102 372
30% 48 102 380
Entity #6: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 108 167
95% 53 108 240
90% 53 108 252
70% 53 108 274
50% 53 109 302
40% 53 109 325
30% 53 109 342
Entity #7: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 52 105 190
95% 52 105 269
90% 52 105 281
70% 52 105 297
50% 52 107 312
40% 52 107 339
30% 52 107 348
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 51 107 172
95% 52 108 241
90% 52 108 254
70% 52 108 275
50% 52 108 313
40% 52 108 340
30% 52 110 341
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 48 102 201
95% 48 102 284
90% 48 102 298
70% 48 102 314
50% 48 103 344
40% 48 103 367
30% 48 103 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.