Sequence Similarity Clusters for the Entities in PDB 1I5Y

Entity #1 | Chains: A
TRANSMEMBRANE GLYCOPROTEIN (GP41) protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 74449
95 % 8 13 3783 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.6
PDBFlex
90 % 8 13 3845
70 % 9 17 1766
50 % 9 17 1796
40 % 9 17 1794
30 % 9 17 1750

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures