Sequence Similarity Clusters for the Entities in PDB 1I5L

Entity #1 | Chains: U,Y
5'-R(*UP*UP*U)-3' rna, length: 3 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B,C,D,E,F,G,H,I,J,K,L,M,N
PUTATIVE SNRNP SM-LIKE PROTEIN AF-SM1 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 912
95 % 2 2 1238 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 2 2 1267
70 % 2 2 1292
50 % 5 5 516
40 % 5 6 485
30 % 7 12 440

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.