Sequence Similarity Clusters for the Entities in PDB 1I50

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 109 206
95 % 15 109 294
90 % 15 109 306
70 % 15 109 328
50 % 15 111 338
40 % 15 111 373
30 % 15 111 377
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 117 178
95 % 17 117 251
90 % 17 117 260
70 % 17 117 292
50 % 17 117 319
40 % 17 117 346
30 % 17 117 353
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 110 203
95 % 15 111 287
90 % 15 111 300
70 % 15 111 321
50 % 15 113 335
40 % 15 121 321
30 % 15 124 328
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 108 208
95 % 15 108 296
90 % 15 108 310
70 % 15 108 331
50 % 15 109 350
40 % 15 109 381
30 % 15 109 383
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 120 159
95 % 18 120 225
90 % 18 120 236
70 % 18 120 271
50 % 18 121 302
40 % 18 122 320
30 % 18 122 335
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 116 182
95 % 17 116 254
90 % 17 116 263
70 % 17 116 296
50 % 17 119 307
40 % 17 119 333
30 % 17 119 342
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 119 161
95 % 17 120 227
90 % 17 120 238
70 % 17 120 273
50 % 17 120 308
40 % 17 120 334
30 % 17 123 332
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 110 205
95 % 15 110 293
90 % 15 110 305
70 % 15 110 327
50 % 15 111 341
40 % 15 111 376
30 % 15 114 370
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 119 163
95 % 17 119 232
90 % 17 119 242
70 % 17 121 266
50 % 17 129 265
40 % 17 129 289
30 % 17 129 305
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 111 201
95 % 15 111 290
90 % 15 111 302
70 % 15 111 323
50 % 15 111 348
40 % 15 112 372
30 % 15 112 375

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.