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RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1I50
Sequence Clusters for the Sequence Entities in PDB 1I50
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 101 206
95% 15 101 289
90% 15 101 304
70% 15 101 323
50% 15 102 348
40% 15 102 375
30% 15 102 381
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 106 190
95% 17 106 267
90% 17 106 281
70% 17 106 299
50% 17 106 327
40% 17 106 356
30% 17 106 364
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 102 203
95% 15 103 282
90% 15 103 296
70% 15 103 315
50% 15 104 339
40% 15 112 319
30% 15 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 101 207
95% 15 101 291
90% 15 101 306
70% 15 101 325
50% 15 102 350
40% 15 102 378
30% 15 102 385
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 108 186
95% 18 108 258
90% 18 108 271
70% 18 108 290
50% 18 109 309
40% 18 109 336
30% 18 109 348
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 105 194
95% 17 105 276
90% 17 105 288
70% 17 105 306
50% 17 107 319
40% 17 107 350
30% 17 107 355
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 107 187
95% 17 108 259
90% 17 108 272
70% 17 108 291
50% 17 108 320
40% 17 108 351
30% 17 110 346
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 102 205
95% 15 102 288
90% 15 102 303
70% 15 102 322
50% 15 103 346
40% 15 103 373
30% 15 103 379
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 107 188
95% 17 107 265
90% 17 107 277
70% 17 108 288
50% 17 116 275
40% 17 116 305
30% 17 116 321
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 103 201
95% 15 103 285
90% 15 103 300
70% 15 103 317
50% 15 103 352
40% 15 104 369
30% 15 104 375
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.