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RNA POLYMERASE II CRYSTAL FORM II AT 2.8 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1I50
Sequence Clusters for the Sequence Entities in PDB 1I50
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 96 207
95% 15 96 291
90% 15 96 308
70% 15 96 325
50% 15 97 349
40% 15 97 372
30% 15 97 386
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 101 191
95% 17 101 273
90% 17 101 285
70% 17 101 303
50% 17 101 339
40% 17 101 361
30% 17 101 375
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 97 204
95% 15 98 283
90% 15 98 299
70% 15 98 316
50% 15 99 342
40% 15 108 313
30% 15 108 328
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 96 209
95% 15 96 292
90% 15 96 309
70% 15 96 326
50% 15 97 352
40% 15 97 374
30% 15 97 388
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 103 183
95% 18 103 261
90% 18 103 273
70% 18 103 297
50% 18 104 318
40% 18 104 343
30% 18 104 354
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 100 193
95% 17 100 277
90% 17 100 289
70% 17 100 309
50% 17 102 330
40% 17 102 353
30% 17 102 365
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 102 186
95% 17 103 263
90% 17 103 276
70% 17 103 298
50% 17 103 331
40% 17 103 354
30% 17 105 349
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 97 205
95% 15 97 289
90% 15 97 306
70% 15 97 322
50% 15 98 348
40% 15 98 371
30% 15 98 385
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 102 189
95% 17 102 268
90% 17 102 280
70% 17 103 293
50% 17 112 274
40% 17 112 304
30% 17 112 318
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 98 203
95% 15 98 286
90% 15 98 303
70% 15 98 318
50% 15 98 358
40% 15 99 368
30% 15 99 380
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.