Sequence Similarity Clusters for the Entities in PDB 1I4E

Entity #1 | Chains: A
Early 35 kDa protein protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12545
95 % 3 5 7030 Flexibility: Medium
Max RMSD: 7.1, Avg RMSD: 3.4
PDBFlex
90 % 3 5 7012
70 % 3 5 6838
50 % 3 5 6341
40 % 3 5 5936
30 % 3 5 5315
Entity #2 | Chains: B
Caspase-8 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 27676
95 % 5 7 6476
90 % 5 7 6463
70 % 5 7 6307
50 % 5 7 5906
40 % 5 7 5529
30 % 107 112 225

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures