Sequence Similarity Clusters for the Entities in PDB 1I4E

Entity #1 | Chains: A
Early 35 kDa protein protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 12761
95 % 3 5 7140 Flexibility: Medium
Max RMSD: 7.1, Avg RMSD: 3.4
PDBFlex
90 % 3 5 7127
70 % 3 5 6945
50 % 3 5 6438
40 % 3 5 6025
30 % 3 5 5399
Entity #2 | Chains: B
Caspase-8 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28071
95 % 5 7 6573
90 % 5 7 6570
70 % 5 7 6401
50 % 5 7 5985
40 % 5 7 5602
30 % 108 113 228

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures