Sequence Similarity Clusters for the Entities in PDB 1I4E

Entity #1 | Chains: A
Early 35 kDa protein protein, length: 299 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 11864
95 % 3 5 6660 Flexibility: Medium
Max RMSD: 6.9, Avg RMSD: 3.2
PDBFlex
90 % 3 5 6646
70 % 3 5 6475
50 % 3 5 6019
40 % 3 5 5631
30 % 3 5 5051
Entity #2 | Chains: B
Caspase-8 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 26194
95 % 5 7 6128
90 % 5 7 6113
70 % 5 7 5981
50 % 5 7 5612
40 % 5 7 5250
30 % 106 111 215

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.