Sequence Similarity Clusters for the Entities in PDB 1I3R

Entity #1 | Chains: A,C,E,G
H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, E-K ALPHA CHAIN protein, length: 192 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21860
95 % 6 15 1751 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 49 97 237
70 % 49 97 271
50 % 69 149 180
40 % 69 149 196
30 % 143 310 99
Entity #2 | Chains: B,D,F,H
FUSION PROTEIN CONSISTING OF MHC E-BETA-K PRECURSOR, GLYCINE RICH LINKER, AND HEMOGLOBIN BETA-2 CHAIN protein, length: 228 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 11 1792
95 % 6 15 1742 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 6 15 1779
70 % 67 140 166
50 % 69 149 179
40 % 69 149 195
30 % 144 310 99

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.