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RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1I3Q
Sequence Clusters for the Sequence Entities in PDB 1I3Q
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 96 208
95% 37 96 292
90% 37 96 309
70% 37 96 326
50% 37 97 351
40% 37 97 376
30% 37 97 387
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 101 192
95% 39 101 274
90% 39 101 287
70% 39 101 304
50% 39 101 341
40% 39 101 366
30% 39 101 376
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 97 205
95% 37 98 284
90% 37 98 300
70% 37 98 317
50% 37 99 344
40% 37 107 316
30% 37 107 328
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 96 210
95% 37 96 294
90% 37 96 311
70% 37 96 327
50% 37 97 354
40% 37 97 379
30% 37 97 389
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 103 184
95% 40 103 263
90% 40 103 275
70% 40 103 298
50% 40 104 322
40% 40 104 346
30% 40 104 355
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 100 194
95% 39 100 278
90% 39 100 291
70% 39 100 310
50% 39 102 332
40% 39 102 356
30% 39 102 368
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 102 187
95% 39 103 265
90% 39 103 277
70% 39 103 299
50% 39 103 333
40% 39 103 357
30% 39 105 350
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 97 206
95% 37 97 290
90% 37 97 307
70% 37 97 323
50% 37 98 350
40% 37 98 375
30% 37 98 386
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 102 190
95% 39 102 269
90% 39 102 281
70% 39 103 295
50% 39 111 276
40% 39 111 305
30% 39 111 318
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 98 204
95% 37 98 287
90% 37 98 304
70% 37 98 319
50% 37 98 360
40% 37 99 372
30% 37 99 381
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.