Sequence Similarity Clusters for the Entities in PDB 1I3Q

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 115 222
95 % 40 115 310
90 % 40 115 326
70 % 40 118 342
50 % 40 129 341
40 % 40 129 370
30 % 40 129 378
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 133 180
95 % 40 133 245
90 % 40 133 257
70 % 40 133 288
50 % 40 136 313
40 % 40 136 328
30 % 40 136 340
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 116 220
95 % 40 117 300
90 % 40 117 315
70 % 40 122 324
50 % 40 131 336
40 % 40 139 317
30 % 40 142 326
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 112 226
95 % 38 112 314
90 % 38 112 333
70 % 38 112 371
50 % 38 114 419
40 % 38 114 456
30 % 38 114 453
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 138 174
95 % 43 138 231
90 % 43 138 243
70 % 43 141 274
50 % 43 143 294
40 % 43 152 295
30 % 43 152 307
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 132 183
95 % 40 132 249
90 % 40 132 261
70 % 40 132 289
50 % 40 147 286
40 % 40 147 304
30 % 40 147 318
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 137 177
95 % 42 138 232
90 % 42 138 244
70 % 42 138 279
50 % 42 141 301
40 % 42 141 315
30 % 42 153 304
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 116 221
95 % 40 116 309
90 % 40 116 325
70 % 40 119 339
50 % 40 121 390
40 % 40 121 417
30 % 40 124 411
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 137 178
95 % 42 137 235
90 % 42 137 249
70 % 42 151 255
50 % 42 159 246
40 % 42 159 267
30 % 42 159 275
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 117 217
95 % 40 117 304
90 % 40 117 320
70 % 40 117 357
50 % 40 120 398
40 % 40 122 412
30 % 40 122 418

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.