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RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1I3Q
Sequence Clusters for the Sequence Entities in PDB 1I3Q
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 108 198
95% 38 108 274
90% 38 108 288
70% 38 108 310
50% 38 109 330
40% 38 109 360
30% 38 109 366
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 113 187
95% 40 113 254
90% 40 113 265
70% 40 113 291
50% 40 113 318
40% 40 113 350
30% 40 113 357
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 109 195
95% 38 110 267
90% 38 110 280
70% 38 110 302
50% 38 111 321
40% 38 119 308
30% 38 119 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 108 200
95% 38 108 277
90% 38 108 291
70% 38 108 311
50% 38 109 331
40% 38 109 364
30% 38 109 368
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 41 115 171
95% 41 115 240
90% 41 115 250
70% 41 115 279
50% 41 116 305
40% 41 116 335
30% 41 116 342
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 112 188
95% 40 112 256
90% 40 112 268
70% 40 112 294
50% 40 114 313
40% 40 114 341
30% 40 114 351
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 114 180
95% 40 115 242
90% 40 115 252
70% 40 115 282
50% 40 115 314
40% 40 115 342
30% 40 117 336
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 109 196
95% 38 109 273
90% 38 109 287
70% 38 109 309
50% 38 110 329
40% 38 110 359
30% 38 110 365
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 114 184
95% 40 114 252
90% 40 114 262
70% 40 115 273
50% 40 123 270
40% 40 123 296
30% 40 123 311
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 110 194
95% 38 110 271
90% 38 110 284
70% 38 110 305
50% 38 110 334
40% 38 111 354
30% 38 111 363
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.