Sequence Similarity Clusters for the Entities in PDB 1I3Q

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 114 211
95 % 40 114 299
90 % 40 114 313
70 % 40 114 344
50 % 40 124 346
40 % 40 124 378
30 % 40 124 380
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 127 178
95 % 40 127 246
90 % 40 127 254
70 % 40 127 285
50 % 40 127 321
40 % 40 127 346
30 % 40 127 354
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 115 208
95 % 40 116 288
90 % 40 116 300
70 % 40 116 334
50 % 40 126 336
40 % 40 134 322
30 % 40 137 327
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 111 213
95 % 38 111 307
90 % 38 111 322
70 % 38 111 358
50 % 38 112 411
40 % 38 112 447
30 % 38 112 441
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 132 169
95 % 43 132 231
90 % 43 132 242
70 % 43 132 277
50 % 43 133 303
40 % 43 142 302
30 % 43 142 313
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 126 179
95 % 40 126 248
90 % 40 126 256
70 % 40 126 288
50 % 40 137 298
40 % 40 137 316
30 % 40 137 330
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 131 171
95 % 42 132 234
90 % 42 132 245
70 % 42 132 278
50 % 42 132 308
40 % 42 132 332
30 % 42 143 311
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 115 209
95 % 40 115 298
90 % 40 115 311
70 % 40 115 343
50 % 40 116 394
40 % 40 116 427
30 % 40 119 415
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 131 172
95 % 42 131 236
90 % 42 131 246
70 % 42 141 263
50 % 42 149 257
40 % 42 149 279
30 % 42 149 288
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 116 207
95 % 40 116 294
90 % 40 116 307
70 % 40 116 338
50 % 40 116 397
40 % 40 117 419
30 % 40 117 420

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.