POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1I3Q
Sequence Clusters for the Sequence Entities in PDB 1I3Q
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 101 206
95% 37 101 290
90% 37 101 305
70% 37 101 324
50% 37 102 349
40% 37 102 376
30% 37 102 381
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 106 190
95% 39 106 268
90% 39 106 282
70% 39 106 300
50% 39 106 328
40% 39 106 358
30% 39 106 366
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 102 203
95% 37 103 283
90% 37 103 297
70% 37 103 316
50% 37 104 340
40% 37 112 319
30% 37 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 101 207
95% 37 101 291
90% 37 101 306
70% 37 101 325
50% 37 102 351
40% 37 102 379
30% 37 102 385
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 108 186
95% 40 108 259
90% 40 108 272
70% 40 108 291
50% 40 109 309
40% 40 109 337
30% 40 109 349
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 105 194
95% 39 105 277
90% 39 105 289
70% 39 105 307
50% 39 107 320
40% 39 107 352
30% 39 107 357
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 107 187
95% 39 108 260
90% 39 108 273
70% 39 108 292
50% 39 108 321
40% 39 108 353
30% 39 110 347
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 102 205
95% 37 102 289
90% 37 102 304
70% 37 102 323
50% 37 103 347
40% 37 103 374
30% 37 103 379
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 107 188
95% 39 107 266
90% 39 107 278
70% 39 108 289
50% 39 116 275
40% 39 116 305
30% 39 116 321
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 103 201
95% 37 103 286
90% 37 103 301
70% 37 103 318
50% 37 103 353
40% 37 104 370
30% 37 104 375
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.