Sequence Similarity Clusters for the Entities in PDB 1I3Q

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 113 203
95 % 40 113 285
90 % 40 113 299
70 % 40 113 321
50 % 40 123 314
40 % 40 123 342
30 % 40 123 351
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 119 164
95 % 40 119 234
90 % 40 119 244
70 % 40 119 278
50 % 40 119 313
40 % 40 119 341
30 % 40 119 350
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 114 200
95 % 40 115 277
90 % 40 115 290
70 % 40 115 316
50 % 40 125 308
40 % 40 133 292
30 % 40 136 300
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 110 207
95 % 38 110 294
90 % 38 110 308
70 % 38 110 329
50 % 38 111 346
40 % 38 111 379
30 % 38 111 384
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 124 152
95 % 43 124 212
90 % 43 124 224
70 % 43 124 257
50 % 43 125 293
40 % 43 134 291
30 % 43 134 311
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 118 166
95 % 40 118 239
90 % 40 118 250
70 % 40 118 282
50 % 40 129 278
40 % 40 129 305
30 % 40 129 326
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 123 158
95 % 42 124 216
90 % 42 124 227
70 % 42 124 261
50 % 42 124 304
40 % 42 124 326
30 % 42 135 306
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 114 202
95 % 40 114 284
90 % 40 114 298
70 % 40 114 320
50 % 40 115 339
40 % 40 115 365
30 % 40 118 367
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 123 159
95 % 42 123 222
90 % 42 123 234
70 % 42 133 214
50 % 42 141 241
40 % 42 141 267
30 % 42 141 283
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 115 199
95 % 40 115 280
90 % 40 115 293
70 % 40 115 318
50 % 40 115 343
40 % 40 116 361
30 % 40 116 372

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.