Sequence Similarity Clusters for the Entities in PDB 1I3Q

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 115 221
95 % 40 115 308
90 % 40 115 325
70 % 40 115 364
50 % 40 126 371
40 % 40 126 402
30 % 40 126 402
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 133 180
95 % 40 133 242
90 % 40 133 254
70 % 40 133 287
50 % 40 133 323
40 % 40 133 343
30 % 40 133 347
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 116 219
95 % 40 117 297
90 % 40 117 313
70 % 40 117 351
50 % 40 128 361
40 % 40 136 327
30 % 40 139 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 112 225
95 % 38 112 313
90 % 38 112 332
70 % 38 112 369
50 % 38 114 419
40 % 38 114 455
30 % 38 114 451
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 138 174
95 % 43 138 231
90 % 43 138 243
70 % 43 138 277
50 % 43 140 304
40 % 43 149 299
30 % 43 149 312
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 132 182
95 % 40 132 246
90 % 40 132 257
70 % 40 132 289
50 % 40 144 296
40 % 40 144 312
30 % 40 144 324
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 137 177
95 % 42 138 232
90 % 42 138 244
70 % 42 138 279
50 % 42 138 312
40 % 42 138 326
30 % 42 150 309
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 116 220
95 % 40 116 307
90 % 40 116 324
70 % 40 116 362
50 % 40 118 407
40 % 40 118 438
30 % 40 121 428
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 137 178
95 % 42 137 234
90 % 42 137 247
70 % 42 148 262
50 % 42 156 255
40 % 42 156 275
30 % 42 156 280
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 117 216
95 % 40 117 300
90 % 40 117 317
70 % 40 117 354
50 % 40 117 415
40 % 40 119 435
30 % 40 119 436

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.