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RNA POLYMERASE II CRYSTAL FORM I AT 3.1 A RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1I3Q
Sequence Clusters for the Sequence Entities in PDB 1I3Q
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 101 204
95% 37 101 289
90% 37 101 304
70% 37 101 321
50% 37 102 348
40% 37 102 374
30% 37 102 380
Entity #10: Chains: L - DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 106 190
95% 39 106 265
90% 39 106 279
70% 39 106 298
50% 39 106 327
40% 39 106 355
30% 39 106 363
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 102 201
95% 37 103 280
90% 37 103 294
70% 37 103 314
50% 37 104 339
40% 37 112 317
30% 37 112 327
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 101 205
95% 37 101 291
90% 37 101 306
70% 37 101 323
50% 37 102 350
40% 37 102 377
30% 37 102 384
Entity #4: Chains: E - DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 40 108 186
95% 40 108 257
90% 40 108 270
70% 40 108 289
50% 40 109 308
40% 40 109 335
30% 40 109 347
Entity #5: Chains: F - DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 105 193
95% 39 105 274
90% 39 105 286
70% 39 105 305
50% 39 107 318
40% 39 107 349
30% 39 107 354
Entity #6: Chains: H - DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 107 187
95% 39 108 258
90% 39 108 271
70% 39 108 290
50% 39 108 319
40% 39 108 350
30% 39 110 345
Entity #7: Chains: I - DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 102 203
95% 37 102 288
90% 37 102 303
70% 37 102 320
50% 37 103 346
40% 37 103 372
30% 37 103 378
Entity #8: Chains: J - DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 107 188
95% 39 107 263
90% 39 107 275
70% 39 108 287
50% 39 116 274
40% 39 116 304
30% 39 116 319
Entity #9: Chains: K - DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 103 200
95% 37 103 283
90% 37 103 298
70% 37 103 317
50% 37 103 352
40% 37 104 368
30% 37 104 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.