Sequence Similarity Clusters for the Entities in PDB 1I3Q

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 115 229
95 % 40 115 321
90 % 40 115 339
70 % 41 120 356
50 % 41 132 368
40 % 41 132 393
30 % 41 132 397
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 138 183
95 % 40 138 244
90 % 40 138 259
70 % 40 138 289
50 % 41 143 313
40 % 41 143 328
30 % 41 143 336
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 116 226
95 % 40 117 313
90 % 40 117 329
70 % 41 124 339
50 % 41 134 357
40 % 41 142 324
30 % 41 145 330
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 112 232
95 % 38 112 326
90 % 38 112 345
70 % 38 112 378
50 % 38 114 439
40 % 38 114 470
30 % 38 114 471
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 143 172
95 % 43 143 233
90 % 43 143 248
70 % 44 148 271
50 % 44 150 291
40 % 44 160 284
30 % 44 160 293
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 137 185
95 % 40 137 247
90 % 40 137 262
70 % 40 137 294
50 % 41 155 279
40 % 41 155 298
30 % 41 155 307
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 142 174
95 % 42 143 234
90 % 42 143 249
70 % 42 143 280
50 % 43 148 296
40 % 43 148 311
30 % 43 161 292
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 116 228
95 % 40 116 320
90 % 40 116 338
70 % 41 121 355
50 % 41 123 406
40 % 41 123 436
30 % 41 126 425
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 142 175
95 % 42 142 236
90 % 42 142 250
70 % 43 159 250
50 % 43 167 246
40 % 43 167 264
30 % 43 167 270
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 117 224
95 % 40 117 315
90 % 40 117 333
70 % 40 117 369
50 % 41 122 416
40 % 41 124 434
30 % 41 124 435

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.