Sequence Similarity Clusters for the Entities in PDB 1I3Q

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT protein, length: 1733 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 109 204
95 % 38 109 285
90 % 38 109 298
70 % 38 109 321
50 % 38 111 331
40 % 38 111 363
30 % 38 111 372
Entity #10 | Chains: L
DNA-DIRECTED RNA POLYMERASE II 7.7KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 117 165
95 % 40 117 233
90 % 40 117 243
70 % 40 117 272
50 % 40 117 308
40 % 40 117 335
30 % 40 117 345
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II 140KD POLYPEPTIDE protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 110 200
95 % 38 111 279
90 % 38 111 292
70 % 38 111 314
50 % 38 113 328
40 % 38 121 314
30 % 38 124 320
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II 45KD POLYPEPTIDE protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 108 207
95 % 38 108 289
90 % 38 108 302
70 % 38 108 323
50 % 38 109 342
40 % 38 109 373
30 % 38 109 378
Entity #4 | Chains: E
DNA-DIRECTED RNA POLYMERASE II 27KD POLYPEPTIDE protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 41 120 158
95 % 41 120 218
90 % 41 120 229
70 % 41 120 262
50 % 41 121 293
40 % 41 122 313
30 % 41 122 327
Entity #5 | Chains: F
DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 116 167
95 % 40 116 236
90 % 40 116 245
70 % 40 116 275
50 % 40 119 298
40 % 40 119 325
30 % 40 119 334
Entity #6 | Chains: H
DNA-DIRECTED RNA POLYMERASE II 14.5KD POLYPEPTIDE protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 119 160
95 % 40 120 220
90 % 40 120 231
70 % 40 120 264
50 % 40 120 299
40 % 40 120 326
30 % 40 123 324
Entity #7 | Chains: I
DNA-DIRECTED RNA POLYMERASE II 14.2KD POLYPEPTIDE protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 110 203
95 % 38 110 284
90 % 38 110 297
70 % 38 110 320
50 % 38 111 333
40 % 38 111 365
30 % 38 114 365
Entity #8 | Chains: J
DNA-DIRECTED RNA POLYMERASE II 8.3KD POLYPEPTIDE protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 119 161
95 % 40 119 223
90 % 40 119 234
70 % 40 121 256
50 % 40 129 257
40 % 40 129 277
30 % 40 129 295
Entity #9 | Chains: K
DNA-DIRECTED RNA POLYMERASE II 13.6KD POLYPEPTIDE protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 111 198
95 % 38 111 281
90 % 38 111 294
70 % 38 111 317
50 % 38 111 341
40 % 38 112 362
30 % 38 112 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.