Sequence Similarity Clusters for the Entities in PDB 1I3O

Entity #1 | Chains: A,C
CASPASE 3 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 42429
95 % 2 2 12587 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 12382
70 % 2 2 11673
50 % 2 2 10412
40 % 2 2 9443
30 % 2 2 8228
Entity #2 | Chains: B,D
CASPASE 3 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 36 703
95 % 37 39 909 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 40 42 832
70 % 40 42 867
50 % 64 66 443
40 % 64 67 468
30 % 78 83 324
Entity #3 | Chains: E,F
BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 28925
95 % 2 4 10661
90 % 2 4 10522
70 % 2 4 9997
50 % 2 4 9046
40 % 2 4 8280
30 % 2 4 7294

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.