Sequence Similarity Clusters for the Entities in PDB 1I3O

Entity #1 | Chains: A,C
CASPASE 3 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41905
95 % 2 2 12424 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 12220
70 % 2 2 11485
50 % 2 2 10249
40 % 2 2 9294
30 % 2 2 8096
Entity #2 | Chains: B,D
CASPASE 3 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 36 696
95 % 37 39 902 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 40 42 827
70 % 40 42 862
50 % 64 66 438
40 % 64 67 461
30 % 78 83 321
Entity #3 | Chains: E,F
BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28501
95 % 2 4 10524 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 4 10383
70 % 2 4 9837
50 % 2 4 8909
40 % 2 4 8164
30 % 2 4 7189

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.