Sequence Similarity Clusters for the Entities in PDB 1I3O

Entity #1 | Chains: A,C
CASPASE 3 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43687
95 % 3 3 10791 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 10643
70 % 3 3 10114
50 % 3 3 9167
40 % 3 3 8387
30 % 3 3 7389
Entity #2 | Chains: B,D
CASPASE 3 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 35 37 714
95 % 38 40 920 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 41 43 845
70 % 41 43 882
50 % 65 67 451
40 % 65 68 483
30 % 79 84 341
Entity #3 | Chains: E,F
BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 29800
95 % 2 4 10956 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 4 10805
70 % 2 4 10260
50 % 2 4 9288
40 % 2 4 8497
30 % 2 4 7481

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures