Sequence Similarity Clusters for the Entities in PDB 1I3O

Entity #1 | Chains: A,C
CASPASE 3 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41275
95 % 2 2 12207 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 12007
70 % 2 2 11296
50 % 2 2 10107
40 % 2 2 9158
30 % 2 2 7973
Entity #2 | Chains: B,D
CASPASE 3 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 34 36 680
95 % 37 39 887 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 40 42 807
70 % 40 42 850
50 % 64 66 430
40 % 64 67 455
30 % 78 83 316
Entity #3 | Chains: E,F
BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28058
95 % 2 4 10329 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 4 10191
70 % 2 4 9660
50 % 2 4 8767
40 % 2 4 8031
30 % 2 4 7071

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.