Sequence Similarity Clusters for the Entities in PDB 1I3O

Entity #1 | Chains: A,C
CASPASE 3 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44273
95 % 16 16 2377 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 16 16 2444
70 % 16 16 2446
50 % 16 16 2426
40 % 16 16 2391
30 % 16 16 2276
Entity #2 | Chains: B,D
CASPASE 3 protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 44 46 542
95 % 51 53 622 Flexibility: No
Max RMSD: 3.6, Avg RMSD: 0.4
PDBFlex
90 % 54 56 604
70 % 54 56 644
50 % 78 80 409
40 % 78 81 420
30 % 92 97 299
Entity #3 | Chains: E,F
BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4 protein, length: 121 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30200
95 % 2 4 11156 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 4 11004
70 % 2 4 10438
50 % 2 4 9443
40 % 2 4 8634
30 % 2 4 7596

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures