Sequence Similarity Clusters for the Entities in PDB 1I2M

Entity #1 | Chains: A,C
GTP-BINDING NUCLEAR PROTEIN RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 51 502
95 % 8 74 323 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 8 78 321
70 % 8 81 358
50 % 8 81 416
40 % 9 82 437
30 % 191 797 16
Entity #2 | Chains: B,D
REGULATOR OF CHROMOSOME CONDENSATION 1 protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 4275
95 % 2 3 5059 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 2 3 5076
70 % 2 3 4969
50 % 2 3 4754
40 % 2 4 3969
30 % 2 4 3680

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures