Sequence Similarity Clusters for the Entities in PDB 1I2M

Entity #1 | Chains: A,C
GTP-BINDING NUCLEAR PROTEIN RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 51 486
95 % 8 74 303 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.9
PDBFlex
90 % 8 78 305
70 % 8 81 337
50 % 8 81 397
40 % 9 82 414
30 % 182 771 16
Entity #2 | Chains: B,D
REGULATOR OF CHROMOSOME CONDENSATION 1 protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14281
95 % 2 2 13527 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 2 2 13309
70 % 2 2 12500
50 % 2 2 11142
40 % 2 3 7769
30 % 2 3 6867

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.