Sequence Similarity Clusters for the Entities in PDB 1I2M

Entity #1 | Chains: A,C
GTP-BINDING NUCLEAR PROTEIN RAN protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 55 506
95 % 8 74 333 Flexibility: Medium
Max RMSD: 15.6, Avg RMSD: 4.8
PDBFlex
90 % 8 78 337
70 % 8 81 371
50 % 8 81 436
40 % 9 82 460
30 % 204 842 13
Entity #2 | Chains: B,D
REGULATOR OF CHROMOSOME CONDENSATION 1 protein, length: 402 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 5171
95 % 2 3 5498 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.9
PDBFlex
90 % 2 3 5530
70 % 2 3 5404
50 % 2 3 5148
40 % 2 4 4180
30 % 2 4 3779

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures