Sequence Similarity Clusters for the Entities in PDB 1I1Y

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 132 204 53
95 % 174 255 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 202 308 35
70 % 471 727 6
50 % 472 732 6
40 % 505 783 10
30 % 547 909 15
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 418 624 2
95 % 447 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 451 677 4
70 % 571 924 4
50 % 583 946 3
40 % 583 946 7
30 % 583 946 12
Entity #3 | Chains: C,F
HIV-RT VARIANT PEPTIDE I1Y (YLKEPVHGV) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures