Sequence Similarity Clusters for the Entities in PDB 1I1Y

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 137 212 58
95 % 174 257 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 202 311 36
70 % 485 746 6
50 % 494 760 7
40 % 521 812 9
30 % 567 939 13
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 453 675 2
95 % 462 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 466 699 4
70 % 589 953 4
50 % 601 975 3
40 % 601 975 6
30 % 601 975 9
Entity #3 | Chains: C,F
HIV-RT VARIANT PEPTIDE I1Y (YLKEPVHGV) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures