Sequence Similarity Clusters for the Entities in PDB 1I1Y

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 197 52
95 % 168 246 58
90 % 194 294 36
70 % 452 692 6
50 % 453 697 6
40 % 486 748 10
30 % 525 868 15
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 406 600 2
95 % 435 644 3
90 % 439 653 4
70 % 552 885 4
50 % 564 907 3
40 % 564 907 9
30 % 564 907 14
Entity #3 | Chains: C,F
HIV-RT VARIANT PEPTIDE I1Y (YLKEPVHGV) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.