Sequence Similarity Clusters for the Entities in PDB 1I1Y

Entity #1 | Chains: A,D
CLASS I HISTOCOMPATIBILITY ANTIGEN protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 129 197 52
95 % 169 246 58
90 % 192 286 35
70 % 439 664 7
50 % 440 669 7
40 % 470 717 10
30 % 506 834 15
Entity #2 | Chains: B,E
BETA 2-MICROGLOBULIN protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 396 579 2
95 % 425 622 3
90 % 429 631 4
70 % 538 859 5
50 % 548 879 5
40 % 548 879 9
30 % 548 879 14
Entity #3 | Chains: C,F
HIV-RT VARIANT PEPTIDE I1Y (YLKEPVHGV) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.