Sequence Similarity Clusters for the Entities in PDB 1I1R

Entity #1 | Chains: A
INTERLEUKIN-6 RECEPTOR BETA CHAIN protein, length: 303 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 34091
95 % 1 2 29280 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 1 2 28113
70 % 1 2 25321
50 % 1 2 21696
40 % 1 2 19135
30 % 1 3 13120
Entity #2 | Chains: B
VIRAL IL-6 protein, length: 181 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 65505
95 % 1 1 53104
90 % 1 1 50326
70 % 1 1 43980
50 % 1 1 37297
40 % 1 1 32626
30 % 1 1 27282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures