Sequence Similarity Clusters for the Entities in PDB 1I1F

Entity #1 | Chains: A,D
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN, GOGO-A0201 ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 204 53
95 % 249 255 59 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 302 308 35
70 % 704 727 6
50 % 706 732 6
40 % 752 783 10
30 % 870 909 15
Entity #2 | Chains: B,E
PROTEIN (BETA 2-MICROGLOBULIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 597 624 2
95 % 640 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 649 677 4
70 % 885 924 4
50 % 903 946 3
40 % 903 946 7
30 % 903 946 12
Entity #3 | Chains: C,F
PROTEIN (HIV-RT VARIANT PEPTIDE I1F (FLKEPVHGV)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures