Sequence Similarity Clusters for the Entities in PDB 1I1F

Entity #1 | Chains: A,D
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN, GOGO-A0201 ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 204 52
95 % 248 254 57 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 296 302 35
70 % 694 717 6
50 % 696 722 6
40 % 742 773 10
30 % 858 897 15
Entity #2 | Chains: B,E
PROTEIN (BETA 2-MICROGLOBULIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 591 618 2
95 % 634 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 643 671 4
70 % 875 914 4
50 % 893 936 3
40 % 893 936 7
30 % 893 936 12
Entity #3 | Chains: C,F
PROTEIN (HIV-RT VARIANT PEPTIDE I1F (FLKEPVHGV)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.