Sequence Similarity Clusters for the Entities in PDB 1I1F

Entity #1 | Chains: A,D
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN, GOGO-A0201 ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 194 199 53
95 % 243 249 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 291 297 36
70 % 683 705 6
50 % 685 710 6
40 % 731 761 10
30 % 843 881 15
Entity #2 | Chains: B,E
PROTEIN (BETA 2-MICROGLOBULIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 581 607 2
95 % 624 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 633 660 4
70 % 861 898 4
50 % 879 920 3
40 % 879 920 8
30 % 879 920 12
Entity #3 | Chains: C,F
PROTEIN (HIV-RT VARIANT PEPTIDE I1F (FLKEPVHGV)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.