Sequence Similarity Clusters for the Entities in PDB 1I1F

Entity #1 | Chains: A,D
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN, GOGO-A0201 ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 199 204 53
95 % 249 255 60 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 303 309 36
70 % 713 736 6
50 % 724 750 6
40 % 761 792 10
30 % 884 923 15
Entity #2 | Chains: B,E
PROTEIN (BETA 2-MICROGLOBULIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 607 634 2
95 % 650 678 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 659 687 4
70 % 901 940 4
50 % 919 962 3
40 % 919 962 7
30 % 919 962 12
Entity #3 | Chains: C,F
PROTEIN (HIV-RT VARIANT PEPTIDE I1F (FLKEPVHGV)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures