Sequence Similarity Clusters for the Entities in PDB 1I1F

Entity #1 | Chains: A,D
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN, GOGO-A0201 ALPHA CHAIN) protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 192 197 52
95 % 240 246 58 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.9
PDBFlex
90 % 284 290 36
70 % 665 684 6
50 % 667 689 6
40 % 712 739 10
30 % 821 856 15
Entity #2 | Chains: B,E
PROTEIN (BETA 2-MICROGLOBULIN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 570 593 2
95 % 612 636 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 621 645 4
70 % 841 875 4
50 % 859 897 4
40 % 859 897 9
30 % 859 897 14
Entity #3 | Chains: C,F
PROTEIN (HIV-RT VARIANT PEPTIDE I1F (FLKEPVHGV)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.