Sequence Similarity Clusters for the Entities in PDB 1I1A

Entity #1 | Chains: A
NEONATAL FC RECEPTOR A protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 15302
95 % 2 3 14383
90 % 2 3 14165
70 % 2 3 13322
50 % 5 12 2144
40 % 5 12 2140
30 % 763 907 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 7596
95 % 5 6 8150
90 % 5 6 8098
70 % 785 922 4
50 % 799 944 3
40 % 799 944 7
30 % 799 944 12
Entity #3 | Chains: C
IG GAMMA-2A CHAIN C REGION protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60466
95 % 1 3 18287 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.0
PDBFlex
90 % 1 3 17911
70 % 2 4 13405
50 % 135 179 142
40 % 135 179 154
30 % 3986 5705 1
Entity #4 | Chains: D
IG GAMMA-2A CHAIN C REGION protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27703
95 % 2 3 18287 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.0
PDBFlex
90 % 2 3 17911
70 % 3 4 13405
50 % 136 179 142
40 % 136 179 154
30 % 3987 5705 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures