Sequence Similarity Clusters for the Entities in PDB 1I1A

Entity #1 | Chains: A
NEONATAL FC RECEPTOR A protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 16862
95 % 2 3 15644 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 2 3 15315
70 % 2 3 14337
50 % 8 15 1792
40 % 8 15 1778
30 % 789 939 13
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 8404
95 % 5 6 8454 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 5 6 8385
70 % 810 953 4
50 % 824 975 3
40 % 824 975 6
30 % 824 975 9
Entity #3 | Chains: C
IG GAMMA-2A CHAIN C REGION protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57147
95 % 1 3 19196 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.0
PDBFlex
90 % 1 3 18677
70 % 2 4 13914
50 % 142 188 139
40 % 142 188 154
30 % 5093 7269 1
Entity #4 | Chains: D
IG GAMMA-2A CHAIN C REGION protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 27826
95 % 2 3 19196 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.0
PDBFlex
90 % 2 3 18677
70 % 3 4 13914
50 % 143 188 139
40 % 143 188 154
30 % 5094 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures