Sequence Similarity Clusters for the Entities in PDB 1I1A

Entity #1 | Chains: A
NEONATAL FC RECEPTOR A protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 15669
95 % 2 3 14693
90 % 2 3 14464
70 % 2 3 13586
50 % 5 12 2197
40 % 5 12 2191
30 % 771 919 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 6 7770
95 % 5 6 8331
90 % 5 6 8274
70 % 795 936 4
50 % 809 958 3
40 % 809 958 7
30 % 809 958 12
Entity #3 | Chains: C
IG GAMMA-2A CHAIN C REGION protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61592
95 % 1 3 18667 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.0
PDBFlex
90 % 1 3 18273
70 % 2 4 13672
50 % 139 185 139
40 % 139 185 151
30 % 4171 5941 1
Entity #4 | Chains: D
IG GAMMA-2A CHAIN C REGION protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 28275
95 % 2 3 18667 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.0
PDBFlex
90 % 2 3 18273
70 % 3 4 13672
50 % 140 185 139
40 % 140 185 151
30 % 4172 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures