Sequence Similarity Clusters for the Entities in PDB 1I1A

Entity #1 | Chains: A
NEONATAL FC RECEPTOR A protein, length: 269 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 14574
95 % 2 3 13738 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 2 3 13519
70 % 2 3 12707
50 % 4 10 2285
40 % 4 10 2273
30 % 720 853 15
Entity #2 | Chains: B
BETA-2-MICROGLOBULIN protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7247
95 % 5 6 7785 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 5 6 7743
70 % 747 872 4
50 % 761 894 4
40 % 761 894 8
30 % 761 894 14
Entity #3 | Chains: C
IG GAMMA-2A CHAIN C REGION protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58012
95 % 1 3 17446 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.8
PDBFlex
90 % 1 3 17085
70 % 2 4 12793
50 % 119 161 145
40 % 119 161 161
30 % 3737 5342 1
Entity #4 | Chains: D
IG GAMMA-2A CHAIN C REGION protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26426
95 % 2 3 17446 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.8
PDBFlex
90 % 2 3 17085
70 % 3 4 12793
50 % 120 161 145
40 % 120 161 161
30 % 3738 5342 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.