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An Information Portal to 105339 Biological Macromolecular Structures

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA
Sequence Clustering and Redundancy Reduction Results
1HYS
Sequence Clusters for the Sequence Entities in PDB 1HYS
Entity #1: Chains: E - 5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' rna, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3' dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - HIV-1 REVERSE TRANSCRIPTASE protein, length: 553 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 17 2151
95% 189 202 62
90% 189 202 65
70% 189 202 81
50% 190 203 118
40% 190 203 140
30% 190 203 162
Entity #4: Chains: B - HIV-1 REVERSE TRANSCRIPTASE protein, length: 425 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 63 67 252
95% 183 196 69
90% 183 196 73
70% 183 196 90
50% 184 197 120
40% 184 197 146
30% 184 197 173
Entity #5: Chains: C - FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46883
95% 2 3 17726
90% 40 43 569
70% 1213 1320 3
50% 2886 3142 1
40% 2887 3143 1
30% 3422 3719 1
Entity #6: Chains: D - FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20899
95% 7 8 6996
90% 7 8 6949
70% 1391 1514 2
50% 2887 3142 1
40% 2888 3143 1
30% 3423 3719 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.