Sequence Similarity Clusters for the Entities in PDB 1HYS

Entity #1 | Chains: E
5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' rna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1164
95 % 214 228 106
90 % 214 228 110
70 % 214 228 126
50 % 215 229 153
40 % 215 229 169
30 % 215 229 185
Entity #4 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE protein, length: 425 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 85 220
95 % 208 222 113
90 % 208 222 118
70 % 208 222 136
50 % 209 223 162
40 % 209 223 176
30 % 209 223 192
Entity #5 | Chains: C
FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55799
95 % 2 3 21129
90 % 59 63 361
70 % 1545 1704 2
50 % 3747 4154 1
40 % 3748 4155 1
30 % 4442 4901 1
Entity #6 | Chains: D
FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 25177
95 % 7 8 8442
90 % 7 8 8370
70 % 1813 2010 1
50 % 3748 4154 1
40 % 3749 4155 1
30 % 4443 4901 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.