Sequence Similarity Clusters for the Entities in PDB 1HYS

Entity #1 | Chains: E
5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' rna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1122
95 % 214 228 103
90 % 214 228 107
70 % 214 228 120
50 % 215 229 147
40 % 215 229 163
30 % 215 229 182
Entity #4 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE protein, length: 425 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 85 217
95 % 208 222 110
90 % 208 222 115
70 % 208 222 132
50 % 209 223 158
40 % 209 223 174
30 % 209 223 189
Entity #5 | Chains: C
FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54458
95 % 2 3 20613
90 % 59 63 355
70 % 1485 1639 3
50 % 3602 3985 1
40 % 3603 3986 1
30 % 4282 4715 1
Entity #6 | Chains: D
FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 24522
95 % 7 8 8202
90 % 7 8 8139
70 % 1746 1932 1
50 % 3603 3985 1
40 % 3604 3986 1
30 % 4283 4715 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.