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CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA
Sequence Clustering and Redundancy Reduction Results
1HYS
Sequence Clusters for the Sequence Entities in PDB 1HYS
Entity #1: Chains: E - 5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' rna, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3' dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - HIV-1 REVERSE TRANSCRIPTASE protein, length: 553 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 17 2028
95% 187 200 60
90% 187 200 63
70% 187 200 76
50% 188 201 114
40% 188 201 138
30% 188 201 159
Entity #4: Chains: B - HIV-1 REVERSE TRANSCRIPTASE protein, length: 425 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 65 257
95% 181 194 68
90% 181 194 72
70% 181 194 86
50% 182 195 117
40% 182 195 146
30% 182 195 170
Entity #5: Chains: C - FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45642
95% 2 3 17299
90% 40 43 557
70% 1187 1291 3
50% 2822 3070 1
40% 2823 3071 1
30% 3340 3629 1
Entity #6: Chains: D - FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20370
95% 7 8 6808
90% 7 8 6761
70% 1361 1480 2
50% 2823 3070 1
40% 2824 3071 1
30% 3341 3629 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.