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CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH A POLYPURINE TRACT RNA:DNA
Sequence Clustering and Redundancy Reduction Results
1HYS
Sequence Clusters for the Sequence Entities in PDB 1HYS
Entity #1: Chains: E - 5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' rna, length: 23 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3' dna, length: 22 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - HIV-1 REVERSE TRANSCRIPTASE protein, length: 553 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 17 2044
95% 187 200 63
90% 187 200 66
70% 187 200 80
50% 188 201 115
40% 188 201 139
30% 188 201 160
Entity #4: Chains: B - HIV-1 REVERSE TRANSCRIPTASE protein, length: 425 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 65 258
95% 181 194 69
90% 181 194 73
70% 181 194 87
50% 182 195 119
40% 182 195 148
30% 182 195 171
Entity #5: Chains: C - FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN protein, length: 214 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46008
95% 2 3 17429
90% 40 43 561
70% 1188 1293 3
50% 2832 3082 1
40% 2833 3083 1
30% 3354 3645 1
Entity #6: Chains: D - FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 3 20528
95% 7 8 6861
90% 7 8 6814
70% 1366 1486 2
50% 2833 3082 1
40% 2834 3083 1
30% 3355 3645 1
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.