Sequence Similarity Clusters for the Entities in PDB 1HYS

Entity #1 | Chains: E
5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' rna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 26 26 1180
95 % 234 248 91 Flexibility: Medium
Max RMSD: 23.3, Avg RMSD: 3.9
PDBFlex
90 % 234 248 96
70 % 234 248 115
50 % 235 249 150
40 % 235 249 165
30 % 235 249 180
Entity #4 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE protein, length: 425 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 100 105 203
95 % 228 242 116 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 1.5
PDBFlex
90 % 228 242 120
70 % 228 242 136
50 % 229 243 157
40 % 229 243 175
30 % 229 243 188
Entity #5 | Chains: C
FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 60734
95 % 2 3 23161
90 % 63 67 376
70 % 2067 2329 1
50 % 4191 4717 1
40 % 4191 4717 1
30 % 4988 5571 1
Entity #6 | Chains: D
FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27606
95 % 7 8 9261 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 7 8 9167
70 % 2026 2282 2
50 % 4192 4717 1
40 % 4192 4717 1
30 % 4989 5571 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.