Sequence Similarity Clusters for the Entities in PDB 1HYS

Entity #1 | Chains: E
5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' rna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 99 107 254
95 % 243 258 115 Flexibility: Medium
Max RMSD: 23.5, Avg RMSD: 3.9
PDBFlex
90 % 243 258 119
70 % 243 258 133
50 % 244 259 161
40 % 245 260 172
30 % 245 260 190
Entity #4 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE protein, length: 425 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 110 118 219
95 % 237 252 120 Flexibility: Low
Max RMSD: 13.7, Avg RMSD: 1.5
PDBFlex
90 % 237 252 123
70 % 237 252 140
50 % 239 254 169
40 % 239 254 182
30 % 239 254 201
Entity #5 | Chains: C
FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26569
95 % 2 3 23399 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 64 68 401
70 % 2241 2553 1
50 % 4552 5180 1
40 % 5105 5834 1
30 % 6369 7269 1
Entity #6 | Chains: D
FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26568
95 % 7 8 9170 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 7 8 9075
70 % 2206 2511 2
50 % 4553 5180 1
40 % 5106 5834 1
30 % 6370 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures