Sequence Similarity Clusters for the Entities in PDB 1HYS

Entity #1 | Chains: E
5'-R(*UP*CP*AP*GP*CP*CP*AP*CP*UP*UP*UP*UP*UP*AP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3' rna, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*TP*AP*AP*AP*AP*AP*GP*TP*GP*GP*CP*TP*G)-3' dna, length: 22 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
HIV-1 REVERSE TRANSCRIPTASE protein, length: 553 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 24 1242
95 % 222 236 106
90 % 222 236 110
70 % 222 236 124
50 % 223 237 149
40 % 223 237 166
30 % 223 237 184
Entity #4 | Chains: B
HIV-1 REVERSE TRANSCRIPTASE protein, length: 425 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 88 93 213
95 % 216 230 113
90 % 216 230 117
70 % 216 230 137
50 % 217 231 162
40 % 217 231 178
30 % 217 231 192
Entity #5 | Chains: C
FAB-28 MONOCLONAL ANTIBODY FRAGMENT LIGHT CHAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58147
95 % 2 3 22070
90 % 61 65 369
70 % 1628 1803 2
50 % 3981 4435 1
40 % 3981 4435 1
30 % 4718 5225 1
Entity #6 | Chains: D
FAB-28 MONOCLONAL ANTIBODY FRAGMENT HEAVY CHAIN protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 26309
95 % 7 8 8820
90 % 7 8 8736
70 % 1925 2145 1
50 % 3982 4435 1
40 % 3982 4435 1
30 % 4719 5225 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.