Sequence Similarity Clusters for the Entities in PDB 1HYR

Entity #1 | Chains: A,B
NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 6605
95 % 5 5 6749 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 5 5 6738
70 % 7 7 4979
50 % 7 7 4750
40 % 7 7 4472
30 % 238 288 52
Entity #2 | Chains: C
MHC CLASS I CHAIN-RELATED PROTEIN A protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 30272
95 % 1 2 26370
90 % 1 2 25434
70 % 1 3 19636
50 % 1 3 16954
40 % 1 3 14995
30 % 749 930 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures