Sequence Similarity Clusters for the Entities in PDB 1HYR

Entity #1 | Chains: A,B
NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5679
95 % 5 5 6332 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 5 6316
70 % 7 7 4680
50 % 7 7 4493
40 % 7 7 4267
30 % 174 220 96
Entity #2 | Chains: C
MHC CLASS I CHAIN-RELATED PROTEIN A protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36651
95 % 1 2 28576 Flexibility: High
Max RMSD: 10.4, Avg RMSD: 10.4
PDBFlex
90 % 1 2 27594
70 % 1 3 19638
50 % 1 3 17044
40 % 1 3 15215
30 % 697 859 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.