Sequence Similarity Clusters for the Entities in PDB 1HYR

Entity #1 | Chains: A,B
NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5734
95 % 5 5 6399 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 5 6382
70 % 7 7 4732
50 % 7 7 4544
40 % 7 7 4319
30 % 174 220 99
Entity #2 | Chains: C
MHC CLASS I CHAIN-RELATED PROTEIN A protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 37145
95 % 1 2 28980 Flexibility: High
Max RMSD: 10.4, Avg RMSD: 10.4
PDBFlex
90 % 1 2 27970
70 % 1 3 19877
50 % 1 3 17239
40 % 1 3 15380
30 % 708 875 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.