Sequence Similarity Clusters for the Entities in PDB 1HYR

Entity #1 | Chains: A,B
NKG2-D TYPE II INTEGRAL MEMBRANE PROTEIN protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 5838
95 % 5 5 6499 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 5 5 6481
70 % 7 7 4811
50 % 7 7 4615
40 % 7 7 4386
30 % 174 220 101
Entity #2 | Chains: C
MHC CLASS I CHAIN-RELATED PROTEIN A protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 37658
95 % 1 2 29376
90 % 1 2 28344
70 % 1 3 20130
50 % 1 3 17444
40 % 1 3 15560
30 % 726 899 15

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures