Sequence Similarity Clusters for the Entities in PDB 1HXS

Entity #1 | Chains: 1
GENOME POLYPROTEIN, COAT PROTEIN VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 21 2279
95 % 1 25 2314
90 % 1 25 2377
70 % 2 36 1531
50 % 5 42 1344
40 % 14 159 276
30 % 14 159 285
Entity #2 | Chains: 2
GENOME POLYPROTEIN, COAT PROTEIN VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 29 1466
95 % 1 31 1787 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 31 1823
70 % 5 48 1136
50 % 13 159 303
40 % 13 159 315
30 % 19 194 165
Entity #3 | Chains: 3
GENOME POLYPROTEIN, COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 31 1336
95 % 1 31 1791 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 1 31 1826
70 % 5 48 1139
50 % 14 168 240
40 % 14 170 258
30 % 20 209 148
Entity #4 | Chains: 4
GENOME POLYPROTEIN, COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 21 2342
95 % 1 23 2714 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 2 33 1712
70 % 5 87 565
50 % 12 122 435
40 % 12 123 463
30 % 12 123 460

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.