Sequence Similarity Clusters for the Entities in PDB 1HXS

Entity #1 | Chains: 1
GENOME POLYPROTEIN, COAT PROTEIN VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 2124
95 % 1 25 2416
90 % 1 25 2489
70 % 2 36 1536
50 % 5 57 1030
40 % 14 160 289
30 % 14 160 306
Entity #2 | Chains: 2
GENOME POLYPROTEIN, COAT PROTEIN VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 31 1558
95 % 1 31 1847 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 31 1886
70 % 5 49 1135
50 % 13 160 319
40 % 13 160 345
30 % 19 197 173
Entity #3 | Chains: 3
GENOME POLYPROTEIN, COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 33 1444
95 % 1 33 1697 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 1 33 1738
70 % 5 49 1142
50 % 14 169 243
40 % 14 171 273
30 % 20 210 156
Entity #4 | Chains: 4
GENOME POLYPROTEIN, COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 21 2660
95 % 1 21 2985 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 2 33 1725
70 % 5 87 577
50 % 12 122 443
40 % 12 123 475
30 % 12 123 480

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures