Sequence Similarity Clusters for the Entities in PDB 1HXS

Entity #1 | Chains: 1
GENOME POLYPROTEIN, COAT PROTEIN VP1 protein, length: 302 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 21 2190
95 % 1 25 2239 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 1 25 2305
70 % 2 36 1485
50 % 5 42 1307
40 % 14 155 275
30 % 14 155 282
Entity #2 | Chains: 2
GENOME POLYPROTEIN, COAT PROTEIN VP2 protein, length: 272 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 29 1411
95 % 1 31 1736 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 31 1768
70 % 5 48 1101
50 % 13 157 293
40 % 13 157 307
30 % 19 192 163
Entity #3 | Chains: 3
GENOME POLYPROTEIN, COAT PROTEIN VP3 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 31 1289
95 % 1 31 1740 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 1 31 1772
70 % 5 48 1104
50 % 14 164 240
40 % 14 166 256
30 % 20 203 147
Entity #4 | Chains: 4
GENOME POLYPROTEIN, COAT PROTEIN VP4 protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 21 2257
95 % 1 23 2628 Flexibility: No
Max RMSD: 2.1, Avg RMSD: 0.4
PDBFlex
90 % 2 33 1656
70 % 5 87 539
50 % 12 122 418
40 % 12 123 445
30 % 12 123 443

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.