Sequence Similarity Clusters for the Entities in PDB 1HXM

Entity #1 | Chains: A,C,E,G
GAMMA-DELTA T-CELL RECEPTOR protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21624
95 % 1 1 18812 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 18408
70 % 1 1 17052
50 % 3 3 10575
40 % 3 3 9586
30 % 4 5 5449
Entity #2 | Chains: B,D,F,H
GAMMA-DELTA T-CELL RECEPTOR protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21357
95 % 1 1 18614 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 18222
70 % 1 1 16906
50 % 3 4 8127
40 % 3 4 7476
30 % 4833 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures