Sequence Similarity Clusters for the Entities in PDB 1HXM

Entity #1 | Chains: A,C,E,G
GAMMA-DELTA T-CELL RECEPTOR protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21976
95 % 1 1 19711 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 1 19169
70 % 3 3 12203
50 % 3 3 10874
40 % 3 3 9791
30 % 5833 7269 1
Entity #2 | Chains: B,D,F,H
GAMMA-DELTA T-CELL RECEPTOR protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21977
95 % 1 1 19712 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 19170
70 % 1 1 17622
50 % 3 4 8289
40 % 3 4 7574
30 % 5834 7269 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures