Sequence Similarity Clusters for the Entities in PDB 1HXM

Entity #1 | Chains: A,C,E,G
GAMMA-DELTA T-CELL RECEPTOR protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20790
95 % 1 1 18157 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 17779
70 % 1 1 16476
50 % 3 3 10224
40 % 3 3 9274
30 % 4 5 5261
Entity #2 | Chains: B,D,F,H
GAMMA-DELTA T-CELL RECEPTOR protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20533
95 % 1 1 17969 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 17598
70 % 1 1 16332
50 % 3 4 7863
40 % 3 4 7231
30 % 4514 5567 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.