Sequence Similarity Clusters for the Entities in PDB 1HXM

Entity #1 | Chains: A,C,E,G
GAMMA-DELTA T-CELL RECEPTOR protein, length: 229 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21320
95 % 1 1 18566 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 1 18172
70 % 1 1 16849
50 % 3 3 10440
40 % 3 3 9468
30 % 4 5 5374
Entity #2 | Chains: B,D,F,H
GAMMA-DELTA T-CELL RECEPTOR protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21059
95 % 1 1 18373 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 1 1 17989
70 % 1 1 16704
50 % 3 4 8022
40 % 3 4 7383
30 % 4695 5780 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures