Sequence Similarity Clusters for the Entities in PDB 1HWT

Entity #1 | Chains: A,E
DNA (5'-D(*GP*CP*GP*CP*TP*AP*TP*TP*AP*TP*CP*GP*CP*TP*AP*TP*TP*AP*GP*C)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,F
DNA (5'-D(*GP*CP*TP*AP*AP*TP*AP*GP*CP*GP*AP*TP*AP*AP*TP*AP*GP*CP*GP*C)-3') dna, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C,D,G,H
PROTEIN (HEME ACTIVATOR PROTEIN) protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23659
95 % 1 4 6369 Flexibility: Medium
Max RMSD: 5.8, Avg RMSD: 3.4
PDBFlex
90 % 1 4 6351
70 % 1 4 6187
50 % 1 4 5775
40 % 1 4 5402
30 % 1 4 4863

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.